Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1250 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCCGCCTGTGACCGCCATGTCCACCGCGCCAACAAGCTCGCCGGAAAACACAGCCGTTTCTCTCTCCTACGACCCGCCTCCACCACCGATTTGCCGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCATTTCTGTTCTGTCGTGAAGACAGAGCAATCCTCTGTAGAGAATGTGACGTTCCAATCCATGGCGCCAACGAACACACCCAAAAGCACAGCCGATTTCTTCTCACCGGAGTGAAGATCTCGCCGTCGTTACCGACTCCTTCTTCCTCCTCCGCCTCTGTCGGCGGCGGCGAGGAGGAGGCAGTTGAAGCTGAAATTGGGTCCTTCAAGGCGTGCTCGAGGAACAGGGCTAAAATGGGGTCTAAGGGGTTGCTTCGAGGTCCATTAATGGAGGATTTGCAGCCATCGATTGTTGGGAATTCGGAGGTTGAAGAAAGTGGAATCAGTGATAATGGGGTTTCATTTTCCACAAGCAGCATTTCAGAGTATTTGGAGAGTTTGCCTGGATGGTGTGTTGAGGAATTTCTCGATTCTTCATGTGCTGCTGATGTTTTCTGTAAAGTTTGA 648 52.31 MKIRCDVCDKEEASVFCPSDEAALCSACDRHVHRANKLAGKHSRFSLLRPASTTDLPPLCDICQVRRAFLFCREDRAILCRECDVPIHGANEHTQKHSRFLLTGVKISPSLPTPSSSSASVGGGEEEAVEAEIGSFKACSRNRAKMGSKGLLRGPLMEDLQPSIVGNSEVEESGISDNGVSFSTSSISEYLESLPGWCVEEFLDSSCAADVFCKV 215
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 13163052 13164186 - Tan0009666.1 Tan05g1250 752558
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1250 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan05g1250 215 ProSiteProfiles Zinc finger B-box type profile. 59 102 IPR000315 GO:0008270(InterPro)
Tan05g1250 215 FunFam B-box zinc finger protein 21 1 100 - -
Tan05g1250 215 CDD Bbox1_BBX-like 5 47 IPR049808 -
Tan05g1250 215 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan05g1250 215 SMART bboxneu5 55 102 IPR000315 GO:0008270(InterPro)
Tan05g1250 215 CDD Bbox1_BBX-like 59 102 IPR049808 -
Tan05g1250 215 Gene3D Classic Zinc Finger 1 101 - -
Tan05g1250 215 Pfam B-box zinc finger 58 94 IPR000315 GO:0008270(InterPro)
Tan05g1250 215 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Tan05g1250 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 207 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1250 Tan-Chr5:13163052 Tan06g1564 Tan-Chr6:24504335 1.80E-28 dispersed
Tan01g4984 Tan-Chr1:115611905 Tan05g1250 Tan-Chr5:13163052 1.10E-12 wgd
Tan02g0764 Tan-Chr2:7230661 Tan05g1250 Tan-Chr5:13163052 4.30E-64 wgd
Tan02g2035 Tan-Chr2:89736909 Tan05g1250 Tan-Chr5:13163052 1.30E-43 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27492 PF00643 zf-B_box 4.90E-06 No_clan Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1250 - - - 0.0