Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1250 | ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCCGCCTGTGACCGCCATGTCCACCGCGCCAACAAGCTCGCCGGAAAACACAGCCGTTTCTCTCTCCTACGACCCGCCTCCACCACCGATTTGCCGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCATTTCTGTTCTGTCGTGAAGACAGAGCAATCCTCTGTAGAGAATGTGACGTTCCAATCCATGGCGCCAACGAACACACCCAAAAGCACAGCCGATTTCTTCTCACCGGAGTGAAGATCTCGCCGTCGTTACCGACTCCTTCTTCCTCCTCCGCCTCTGTCGGCGGCGGCGAGGAGGAGGCAGTTGAAGCTGAAATTGGGTCCTTCAAGGCGTGCTCGAGGAACAGGGCTAAAATGGGGTCTAAGGGGTTGCTTCGAGGTCCATTAATGGAGGATTTGCAGCCATCGATTGTTGGGAATTCGGAGGTTGAAGAAAGTGGAATCAGTGATAATGGGGTTTCATTTTCCACAAGCAGCATTTCAGAGTATTTGGAGAGTTTGCCTGGATGGTGTGTTGAGGAATTTCTCGATTCTTCATGTGCTGCTGATGTTTTCTGTAAAGTTTGA | 648 | 52.31 | MKIRCDVCDKEEASVFCPSDEAALCSACDRHVHRANKLAGKHSRFSLLRPASTTDLPPLCDICQVRRAFLFCREDRAILCRECDVPIHGANEHTQKHSRFLLTGVKISPSLPTPSSSSASVGGGEEEAVEAEIGSFKACSRNRAKMGSKGLLRGPLMEDLQPSIVGNSEVEESGISDNGVSFSTSSISEYLESLPGWCVEEFLDSSCAADVFCKV | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 13163052 | 13164186 | - | Tan0009666.1 | Tan05g1250 | 752558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1250 | 215 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Tan05g1250 | 215 | ProSiteProfiles | Zinc finger B-box type profile. | 59 | 102 | IPR000315 | GO:0008270(InterPro) | |
Tan05g1250 | 215 | FunFam | B-box zinc finger protein 21 | 1 | 100 | - | - | |
Tan05g1250 | 215 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Tan05g1250 | 215 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Tan05g1250 | 215 | SMART | bboxneu5 | 55 | 102 | IPR000315 | GO:0008270(InterPro) | |
Tan05g1250 | 215 | CDD | Bbox1_BBX-like | 59 | 102 | IPR049808 | - | |
Tan05g1250 | 215 | Gene3D | Classic Zinc Finger | 1 | 101 | - | - | |
Tan05g1250 | 215 | Pfam | B-box zinc finger | 58 | 94 | IPR000315 | GO:0008270(InterPro) | |
Tan05g1250 | 215 | Pfam | B-box zinc finger | 3 | 46 | IPR000315 | GO:0008270(InterPro) | |
Tan05g1250 | 215 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 207 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1250 | Tan-Chr5:13163052 | Tan06g1564 | Tan-Chr6:24504335 | 1.80E-28 | dispersed | |
Tan01g4984 | Tan-Chr1:115611905 | Tan05g1250 | Tan-Chr5:13163052 | 1.10E-12 | wgd | |
Tan02g0764 | Tan-Chr2:7230661 | Tan05g1250 | Tan-Chr5:13163052 | 4.30E-64 | wgd | |
Tan02g2035 | Tan-Chr2:89736909 | Tan05g1250 | Tan-Chr5:13163052 | 1.30E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27492 | PF00643 | zf-B_box | 4.90E-06 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1250 | - | - | - | 0.0 |