Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1259 ATGGCTACTTACTACTCTAGTTCGAATAACGAAAGAGATGCTACTCCTATCCTTTATTCAAGAGGAGCTTTGATCGGTTCGTATGAAGAAACATCAGTTCTTCCCAGGAATATGATGATGCATGTAAATTCTGGGGCGTACATGGATTCATTGCCTTCACAGGGGCAAAATGGTTGTGGTCAGATAACGTCGGTCGGAGCTACAGGAACCACCCAACAACAGCAAGAGTTTTTGTCGAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGGAAAGGAGTGAAATGCTTGGTGGGAATTCGATGCGAGGCCCAACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGCACACAAATCCCATCTGCAATCCAAATGCCTTCAATTCCATATAGGAATTCGGATATGGGTTTAACTTCATTCTTGAGTCCTAATCCGACGAATTCAGGCGAGGATGGCTGCAGAAATGGTGCTTCTAGAGACGAGCAGTTGAGAAATGGAGAAAACCTGCCACCTAGTTTTCAAGAATTGGCGAAGGGCGAATTATCTCAATACAGTATGTCTAGTATTGCAAGAACTATGCCGAATTCGAAGTACCTCAAGGCAGCACAACAACTGCTTGATGAAGTGGTTAATGTCAGGGAAGCTTTGAAGCGACCCAATAATGAGAGAAACCAGAGCTCACATGAGCATGAAACTAGAAGTGTTAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCGAGCGGAGCATCTTCAAACCCTCAAGAAACTGGAAGCAATTCAACATGTGAGCTCTCACATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACTAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAATATTATCACCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCCGGATGTGGGGCATCTAAGCCGTATACTGCACTAGCACTCCAGACTATATCCCGCCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTTAGAGCTACCCGTAAAAGCCTAGGAGAGCATGAAAATTCTGGTAATGACAAAGGAGTTGGAATCGCCCGTCTCCGATACGTGGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTTGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCAAGGCAGACGGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCTCGTGTGCGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAGATAGGCAGTGCAGAAATGGACTCTATATCATCATCTGAAAATGCTGGCAAAGGAACAAAAGGAGATAACAGGACCTTCGAGGATGATAAAGAGGAGGATCTTCAACAAAGTGCTAGTTCAACAGCCACCGAAAGATGTAGTGCCGGAGATATTATCGACTTAAAATCTGATCAAGCCTCTAATCTGGGAAATTCAGGTTCCACCAGACTAGCTGGTTTCCAAAATGGCGCTCATGTCGAAGCCCAAAATGAGCTGGTAAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCACTCTCAGGCAGGGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTCGGGGCAGTTAGCGGGGTATCGCTTACGCTGGGCTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGGGGGGATGAAATGTACAATGCCACAGCGTCTTCTCTCGGGGAAACGGTGCATTTTGAATGCGTGAATGCTGGTAATCCACAACCGAGGTTCGGCCCTTCTCATCTTTATCATGATTTTGTTGTGTAA 2046 45.65 MATYYSSSNNERDATPILYSRGALIGSYEETSVLPRNMMMHVNSGAYMDSLPSQGQNGCGQITSVGATGTTQQQQEFLSNLGGSQIAEHDFNTWREERSEMLGGNSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSAIQMPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQLRNGENLPPSFQELAKGELSQYSMSSIARTMPNSKYLKAAQQLLDEVVNVREALKRPNNERNQSSHEHETRSVKNGDAGTKNDSSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGIARLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSAEMDSISSSENAGKGTKGDNRTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQASNLGNSGSTRLAGFQNGAHVEAQNELVKSREELRPNVNNSNFFPDAIVHSQAGSDRFMAAAAAYHMSELGRFGAVSGVSLTLGLQHCEGGGIPMPAGTHHGFAAMRGDEMYNATASSLGETVHFECVNAGNPQPRFGPSHLYHDFVV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13579694 13585064 + Tan0012593.1 Tan05g1259 752567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1259 681 MobiDBLite consensus disorder prediction 148 167 - -
Tan05g1259 681 MobiDBLite consensus disorder prediction 232 285 - -
Tan05g1259 681 FunFam BEL1-like homeodomain protein 4 409 471 - -
Tan05g1259 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677(InterPro)
Tan05g1259 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 153 502 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g1259 681 SMART prehox3 201 356 IPR006563 -
Tan05g1259 681 MobiDBLite consensus disorder prediction 148 186 - -
Tan05g1259 681 Pfam Associated with HOX 208 355 IPR006563 -
Tan05g1259 681 SMART HOX_1 406 470 IPR001356 GO:0003677(InterPro)
Tan05g1259 681 MobiDBLite consensus disorder prediction 480 494 - -
Tan05g1259 681 MobiDBLite consensus disorder prediction 478 520 - -
Tan05g1259 681 MobiDBLite consensus disorder prediction 232 252 - -
Tan05g1259 681 Coils Coil 288 308 - -
Tan05g1259 681 MobiDBLite consensus disorder prediction 253 285 - -
Tan05g1259 681 CDD homeodomain 406 467 IPR001356 GO:0003677(InterPro)
Tan05g1259 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan05g1259 681 SUPERFAMILY Homeodomain-like 407 473 IPR009057 -
Tan05g1259 681 Gene3D - 401 480 - -
Tan05g1259 681 MobiDBLite consensus disorder prediction 495 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1259 Tan-Chr5:13579694 Tan06g0396 Tan-Chr6:3010855 1.50E-89 dispersed
Tan05g1259 Tan-Chr5:13579694 Tan08g1623 Tan-Chr8:65871483 1.60E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27493 PF07526 POX 6.20E-51 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1259 - - - 0.0