Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1280 ATGTGGGCTGATATGCTTCAGTGGAGGAAGGAATTTGACGTTGACACAATAGGTGAAGACTTTGAATTCAAAGAGAAAAATGAAGTTCTGAGGTACTATCCTCATGGTTATCATGGCGTGGATAAGGAAGGAAGACCTGTTTACATTGAAAGGTTGGGGAAAGTGGATCCAAACAAACTTATGCAAGTGACAACTATGGATCGATATATAAAGTACCACGTGCAGGAGTTTGAGAAAAGTTTTGCTATCAAGTTTCCAGCCTGTTCTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTCCAAGGCGTGGGCCTCAAGAATTTCACCAAGTCTGCTAGGGAACTCATCATGCGGCTGCAGAAAGTTGATGGTGACAATTACCCAGAAACTCTCAGCCAAATGTACATTATCAATGCTGGTCCTGGATTCCGGATGCTATGGAACACCGTGAAGTCTTTCCTTGACCCCCGAACAACATCTAAAATCCATGTTCTCGGAAACAAGTACCAAAACAAATTACTGGAAATAATTGATTCCAGTGAGTTGCCGGAATTTCTGGGTGGAAGTTGTACCTGTGCAGATTTGGGGGGATGTCTTCGTTCGGACAAGGGGCCATGGAGAAATCCAGAAATTCTAAAGATGATTCATAATGGTGAAGCACGACGGGCCAGGCAGGTTGTAAAAGTTTTAAATAGTGAAGGGAAGGTTGTTGCGTATGCTAAGCCACATTACCCAATGGTGAAAGGTAGCGATACATCCACTGCTGAGTCAGGATCTGAAGCTGAAGACATCGCTTCTCCTAAAGCAATGAAGAGCTATTCTCATCTTCGGTTGACTCCTGTTCGGGAAGAAGCAAGAGTTGGCGGGAAAGGAGGTTTTGCTGCTAGCTTCTCTGGGTATGATGAATATGTTCCCATGGTTGACAAAGCTGTTGATGCTGGATGGAAGAAGCAAGTTTCACTCCAACGGCCTAGTGCCTCAAAAGGGGTTCTTCCACTGCCTGACACTCAAAAAACACCTGAAGCACTTCATGCTCGAATGTTGGTAGTATTCATGGGCTTCTTCATAGCCATTTTGGCTTTCCTCCGTTCACTGGCTTGCCAGATAAGTGGGAAGAAATTGTCTATTGGTAGTCAAAACACTTCAGACTCGTCCCTTGATAAAACAGGCATGGAAGAGAATCGCCCCCCTTCACCAATTGCTAAGTTTACAGAAGCAGAACTCCTCTCTAATCTAATGAAGAGACTGGGTGAGCTGGAGGAGAAGGTTGATACGCTCCAATCAAAACCATCCGAAATGCCATATGAGAAAGAGGAACTACTGAATGCTGCCGTTTGCCGCGTGGATGCCTTGGAAGCAGAGCTGATTGCTACCAAGAAGGCTTTGCATGAAGCGTTGATGAGGCAAGAAGAACTGCTTGCTTACATCGATAGCCAAGAGGAGGCAAAGTTGCGGAAAAAGAAATTTTGCTGGTAA 1491 44.74 MWADMLQWRKEFDVDTIGEDFEFKEKNEVLRYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYIKYHVQEFEKSFAIKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKVDGDNYPETLSQMYIINAGPGFRMLWNTVKSFLDPRTTSKIHVLGNKYQNKLLEIIDSSELPEFLGGSCTCADLGGCLRSDKGPWRNPEILKMIHNGEARRARQVVKVLNSEGKVVAYAKPHYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEARVGGKGGFAASFSGYDEYVPMVDKAVDAGWKKQVSLQRPSASKGVLPLPDTQKTPEALHARMLVVFMGFFIAILAFLRSLACQISGKKLSIGSQNTSDSSLDKTGMEENRPPSPIAKFTEAELLSNLMKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEALMRQEELLAYIDSQEEAKLRKKKFCW 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14319154 14326262 + Tan0020233.2 Tan05g1280 752588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1280 496 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 25 199 IPR001251 -
Tan05g1280 496 MobiDBLite consensus disorder prediction 380 403 - -
Tan05g1280 496 Coils Coil 414 434 - -
Tan05g1280 496 Pfam CRAL/TRIO domain 31 193 IPR001251 -
Tan05g1280 496 SUPERFAMILY CRAL/TRIO domain 27 219 IPR036865 -
Tan05g1280 496 FunFam SEC14 cytosolic factor 13 225 - -
Tan05g1280 496 Coils Coil 453 473 - -
Tan05g1280 496 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 1 485 IPR051026 -
Tan05g1280 496 SMART sec14_4 25 196 IPR001251 -
Tan05g1280 496 Gene3D - 13 224 IPR036865 -
Tan05g1280 496 CDD SEC14 26 193 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1280 K26544 - - csv:101208172 939.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1280 Tan-Chr5:14319154 Tan06g1289 Tan-Chr6:14774166 1.20E-104 dispersed
Tan05g1279 Tan-Chr5:14319154 Tan05g1280 Tan-Chr5:14319154 7.10E-288 tandem
Tan05g1280 Tan-Chr5:14319154 Tan05g1281 Tan-Chr5:14326990 3.70E-138 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43