Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1284 ATGGCCGGTGATCCTTTGACAAGCTCTAATGGCAATGCCAATGTCAATGCACCACCTGATCCGCGGAGGACTTATCAAGTTGTCGTGGCTGCTACTGAAAATATGGGTATTGGTAAGGATGGGAAACTACCATGGACGTTGCCTTCTGATCTCAAATTTTTTAGAAACATAACCACAACAACATCGGATCATGGGAAAAGGAATGCAATTCTAATGGGTCGAAAAACATGGGAGGGTATTCCTCCTGAGCGTCGACCACTACCTGGTCGTCTCAATGTTGTTCTGACTCGCTCTGGGAGCTTTGACATTGCCACTGTTGAAAATGTTATAATATGTGGTAGTATAACATCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGTGGTGGTGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGAGGCAAATGTTGAATGTGACACCTTCATGCCAGCTATTGATAAGTCTATATTTCAGCCATGGTACTCATCCTTTCCTGTGGTGGAAAATAACTTTCGATATTCTTTCACTAGTTATGTTCGTGTGAGGAGCTCAATTGAACCACCCATTGATGAGAACAATGGTCTGGTCTCTCATATCAAGCCTGATTCTTCTAACTTCGAGGCTAAGAAGTTCTCTTTCCTTCCTAAGGAGATTTTTGAGAGGCATGAAGAGTACTTGTACTTAAAACTTGTTCAAGAAATCATCGCAGATGGTACCTCTAAGGATGATAGAACAGGAACAGGTACTTTTTCAAGATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCACTGCTTACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTATGGTTCATAAGTGGTTCAACCAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAATGCTTCCAGAGATTACCTCGATAGTATTGGCTTGAAAGAAAGGGAGGAGGGTGACTTGGGACCTGTATATGGATTCCAGTGGCGACACTTTGGTGCTAGGTATACTGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGTTAAAAAATAATCCAGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCACCTTGCCACATGTTTGCTCAGTTTTATGTAGCAAACGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTCGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACATGCATGATTGCTCATGTTTGTGATCTCGCTCGAGGCGACTTCATACATGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCGATTTTGAAGATTAATCCGGAGAAGAAGGACATCGATTCTTTCGTTGCAGCTGATTTTGAACTAACAGGTTATGACCCTCATGAGAAGATAGCAATGAAAATGGCAGTATAG 1587 42.41 MAGDPLTSSNGNANVNAPPDPRRTYQVVVAATENMGIGKDGKLPWTLPSDLKFFRNITTTTSDHGKRNAILMGRKTWEGIPPERRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIEANVECDTFMPAIDKSIFQPWYSSFPVVENNFRYSFTSYVRVRSSIEPPIDENNGLVSHIKPDSSNFEAKKFSFLPKEIFERHEEYLYLKLVQEIIADGTSKDDRTGTGTFSRFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLKEREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKLKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVAADFELTGYDPHEKIAMKMAV 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14450381 14456631 + Tan0005443.1 Tan05g1284 752592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1284 528 MobiDBLite consensus disorder prediction 1 21 - -
Tan05g1284 528 FunFam Possible thymidylate synthase 239 528 - -
Tan05g1284 528 CDD TS_Pyrimidine_HMase 248 481 IPR023451 -
Tan05g1284 528 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 36 58 IPR017925 GO:0004146(InterPro)
Tan05g1284 528 Gene3D Dihydrofolate Reductase, subunit A 8 203 IPR024072 -
Tan05g1284 528 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 233 528 IPR036926 -
Tan05g1284 528 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Tan05g1284 528 NCBIfam thymidylate synthase 248 528 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Tan05g1284 528 ProSitePatterns Thymidylate synthase active site. 390 418 IPR020940 GO:0004799(InterPro)|GO:0006231(InterPro)
Tan05g1284 528 Pfam Thymidylate synthase 248 528 IPR023451 -
Tan05g1284 528 PIRSF DHFR-TS 9 528 IPR012262 GO:0004146(InterPro)|GO:0004799(InterPro)|GO:0006730(InterPro)
Tan05g1284 528 MobiDBLite consensus disorder prediction 1 19 - -
Tan05g1284 528 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Tan05g1284 528 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 237 528 IPR036926 -
Tan05g1284 528 CDD DHFR 28 200 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Tan05g1284 528 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 7 202 - -
Tan05g1284 528 PANTHER THYMIDYLATE SYNTHASE 1 47 528 IPR045097 GO:0004146(PANTHER)|GO:0004799(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006231(PANTHER)|GO:0016741(InterPro)
Tan05g1284 528 Hamap Thymidylate synthase [thyA]. 245 528 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Tan05g1284 528 SUPERFAMILY Dihydrofolate reductase-like 22 201 IPR024072 -
Tan05g1284 528 PRINTS Thymidylate synthase family signature 423 449 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Tan05g1284 528 PRINTS Thymidylate synthase family signature 379 398 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Tan05g1284 528 PRINTS Thymidylate synthase family signature 286 307 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Tan05g1284 528 PRINTS Thymidylate synthase family signature 461 478 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Tan05g1284 528 PRINTS Thymidylate synthase family signature 405 420 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1284 K13998 - - csv:101208660 1007.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43