Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1294 ATGATCAGATTTTTGTTCGCCGGGAATCTTAATCCGATGGCTCAGAAACTCAAGGTTCTCATCATCGGAGGAACTGGCTACATCGGAAAATTTATAGTGGAAGCCAGCGCCAAAGCAGGTCATTCAACTTATGCATTGGTCCGGGAATCCACGCTCGCTAATTCCGCCAAGTCTCCGATCATCGATAATTTCAGGAGCTTGGGGGTCAATTTCCTCATCGGCGATATCTTCGACAATGAGAGTCTGGTTAAGGCAATAAAGCATGTTGATGTTGTGATATCCACCGTTGGTCGTGCTCTGTTAGCCCATCAAGAGAAGATCATATCTGCTATCAAACAAGCTGGTAATGTGAAGAGATTCTTCCCCTCGGAGTTTGGCAACGATGTGGATCGTGTTCACGCAGTGGAGCCGGCAAAATCAATGTTTGATGCTAAGGTTGAAATTCGTAGGGCTGTTGAGGCAGAGGGAATCCCCCATACATTTGTGGTATGCAATTTCTTTGATGGTTACTTTCTTCGTAACTTTTGTCAGCCAGGAGCCACTGATCCACCTAGGGACAAAATCAAAATCATTGGGGATGGAAATCCCAAAGTTATCTACAACAAGGAAGAAGACATTGGCACATACACCATCCGTGCCATAGAGGATCCAAGGACCCTCAACAAGATCTTGTACATTAGACCTCCTGCCAATATCTACTCGACTAACGAGCTAGTATCGCTATGGGAGAGAAAAATAGGCTCGACTCTTGAAAGGATCTACATCCCAGAAGAGGAGCTGTTGAAGAACATACAAGAGGCTCCATTTCCACTTAACACAGTATTAGCAATTAGTCACACTGCATTTGTGAAGGGAGATCATACCAACTTTGATATTGAACCATCATTTGGAGTGGAAGCTTCAGAGCTGTACTCAGATGTTCAATACGCAACTGTGGAAGAATACCTCAACCAGTTTGTTTAG 963 44.34 MIRFLFAGNLNPMAQKLKVLIIGGTGYIGKFIVEASAKAGHSTYALVRESTLANSAKSPIIDNFRSLGVNFLIGDIFDNESLVKAIKHVDVVISTVGRALLAHQEKIISAIKQAGNVKRFFPSEFGNDVDRVHAVEPAKSMFDAKVEIRRAVEAEGIPHTFVVCNFFDGYFLRNFCQPGATDPPRDKIKIIGDGNPKVIYNKEEDIGTYTIRAIEDPRTLNKILYIRPPANIYSTNELVSLWERKIGSTLERIYIPEEELLKNIQEAPFPLNTVLAISHTAFVKGDHTNFDIEPSFGVEASELYSDVQYATVEEYLNQFV 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15105395 15107384 - Tan0009200.1 Tan05g1294 752602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1294 320 Gene3D - 18 306 - -
Tan05g1294 320 PANTHER PINORESINOL REDUCTASE-RELATED 16 320 IPR050608 -
Tan05g1294 320 CDD PCBER_SDR_a 18 315 IPR045312 GO:0016491(InterPro)
Tan05g1294 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 288 IPR036291 -
Tan05g1294 320 Pfam NmrA-like family 19 249 IPR008030 -
Tan05g1294 320 Gene3D - 166 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1294 K23050 - - csv:101210299 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1294 Tan-Chr5:15105395 Tan05g1296 Tan-Chr5:15163066 5.90E-113 dispersed
Tan05g1294 Tan-Chr5:15105395 Tan05g1295 Tan-Chr5:15163066 1.20E-137 tandem
Tan02g1050 Tan-Chr2:16398082 Tan05g1294 Tan-Chr5:15105395 5.10E-130 transposed
Tan02g1978 Tan-Chr2:88583807 Tan05g1294 Tan-Chr5:15105395 3.50E-118 transposed
Tan02g0783 Tan-Chr2:7468224 Tan05g1294 Tan-Chr5:15105395 6.10E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g367 . . . . . . . . . . Cma02g00392 Cma20g00844 Car02g00255 Car20g00731 . . . Bhi05g01245 Tan02g0784 Cmetu01g1772 . . . . . . . . . . . . . . . Lsi10g00378 . . . . . . . . . . . Sed01g0298 Cmo02g00399 Cmo20g00855 . . . . . . Bhi10g01996 Tan05g1294 Cmetu11g1946 . . . . . . . . . . . . Csa02g01267 . Cme11g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234