Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1298 ATGGCACCTGCAGATATGAGCACTGCGAGGCTGATAAGAGTGGATCAATCGGGAAAGGGAGATTTCAAGAAGATTCAAGAAGCAATTGATTCTGTTCCATCTAATAACAATGAACTTGTTTTCATTTGGGTTAAGCCTGGAACTTATAGAGAGAAAATTGTGGTGCCGGAGGACAAGCCGTTCATAACATTGAGTGGCAGCAAGGCCTCCGACACCATAATCACATGGAACCAAGGGAGAGATTTACTTGAATCTCAGGTCATCTCCGTTTTCGCGTCGGACTTCGTCGGCCGTTTTCTGACCATCCAGAACACCTTCGGAACGGCCGGCATTGCGGTGGCGCTGAGGGTCTCCGCCGACAGAGCCGCCTTCTACGGCTGCCGGATCATCTCCTTTCAAGATACCCTTCTCGACGACGCCGGAAGACATTACTTCAAAAACTGTTACATCGAAGGAGCCACCGATTTCATATGCGGAAACGCCGCTTCTCTTTATGAGAAGTGCCATTTGCATTCGACGTCGGAAAGAGGCGGGGCGATGACAGCGCAGCACCGGAACACGGCGGAGGAGAACACTGGGTTCGTGTTCTTGGGTGGCAAAATTACAGGAAGTGGATCGACTTTTCTTGGACGGCCATGGGGCTCTTGCTCTAGGGTTGTGTTTGGCTACACTCACATGTCCAATGTTGTTAATACAAATGTTACGGGCCAGGGGCAAACAGAGCGAAAAGAGTTGCGTGGTCGCGCACCCTGTCGACGGATGAGGCTGCAAAACTCTTCACCAAAGACATGA 792 50.63 MAPADMSTARLIRVDQSGKGDFKKIQEAIDSVPSNNNELVFIWVKPGTYREKIVVPEDKPFITLSGSKASDTIITWNQGRDLLESQVISVFASDFVGRFLTIQNTFGTAGIAVALRVSADRAAFYGCRIISFQDTLLDDAGRHYFKNCYIEGATDFICGNAASLYEKCHLHSTSERGGAMTAQHRNTAEENTGFVFLGGKITGSGSTFLGRPWGSCSRVVFGYTHMSNVVNTNVTGQGQTERKELRGRAPCRRMRLQNSSPKT 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15292637 15307829 - Tan0000514.1 Tan05g1298 752606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1298 263 Pfam Pectinesterase 14 233 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan05g1298 263 SUPERFAMILY Pectin lyase-like 8 231 IPR011050 -
Tan05g1298 263 Gene3D - 6 249 IPR012334 -
Tan05g1298 263 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 233 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1298 K01051 - - csv:101215864 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1298 Tan-Chr5:15292637 Tan09g1036 Tan-Chr9:62550638 1.80E-51 dispersed
Tan07g1812 Tan-Chr7:69675466 Tan05g1298 Tan-Chr5:15292637 5.50E-51 transposed
Tan10g1080 Tan-Chr10:10080749 Tan05g1298 Tan-Chr5:15292637 9.20E-43 transposed
Tan11g0483 Tan-Chr11:4077134 Tan05g1298 Tan-Chr5:15292637 6.00E-49 transposed
Tan02g1980 Tan-Chr2:88702693 Tan05g1298 Tan-Chr5:15292637 3.00E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g375 . . . . . . . . . . Cma02g00394 . Car02g00256 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00375 . Chy11g00374 . . . . . . . . . Sed05g3617 . . . . . . . Cpe05g01263 Bhi10g02000 Tan05g1298 Cmetu11g1012 . Hepe08g1012 . . . . . . . . . . Csa02g01264 . Cme11g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51