Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1303 ATGTTGAAGTCGGAGATGTCGGAGAGGGCTCGTGTCAAATGGCGGCGACCCTACCGTGACATCCACAGCTTGTTGCCCATCTCGACTCCGGCGAGTCGGGTTGATGACTTTCATGATCTGGTTGCACCTGAAGGGTGGTCTGAGTTGGCCAAGTACGAGATCTCTTCGATGGAGTTTCGAACAAATCTGGCTGTATCAACAACCATGACTTGTTCGCCTCCACCAGAGGCAAACTCTATGATCGTGGGAGAGATTCCTAAGAAAAGAAAAGCCGCCAACAAGAACAAAGAAGTGAAATCCAAAGTGGGAAATGCTGAATCTGAGGATGGAAAAAACAGAGAAAAAAGAATGAAACAAAGTATTGAAGAAGAAGAAGAAGAAGAAGAAGAATCAAAGATAACAGAGCAAACAGAGACATCGAAACAGAATTCAAAAGCTTCTGAAGAAGTTCAAAAATCAGATTATGTTCATGTTAGAGCCCGTCGAGGCCAAGCCACAGACAGCCATAGTCTAGCAGAAAGAGCGAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTACAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGTTCTTATCAATGAAGTTGGCTACTCTGAATCCCAGACTCGATTTCATCAATGTGGATGACCTTTTATCCAAACAGGCAAATTTACAGGTGTTTCCGACGATAGAAATCTCACCGGAAACGGCTAATTCTTCATCGTACTTTAATGATCAACTCGGAATCGGCTCAAGCCCTGTAACAGTCCCACAAACTCCATTGATGAACTCGGCTTCTATTACTCATTTTTGA 882 42.74 MLKSEMSERARVKWRRPYRDIHSLLPISTPASRVDDFHDLVAPEGWSELAKYEISSMEFRTNLAVSTTMTCSPPPEANSMIVGEIPKKRKAANKNKEVKSKVGNAESEDGKNREKRMKQSIEEEEEEEEESKITEQTETSKQNSKASEEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATLNPRLDFINVDDLLSKQANLQVFPTIEISPETANSSSYFNDQLGIGSSPVTVPQTPLMNSASITHF 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15486171 15489336 - Tan0019417.2 Tan05g1303 752611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1303 293 CDD bHLH_AtBPE_like 154 240 - -
Tan05g1303 293 MobiDBLite consensus disorder prediction 145 173 - -
Tan05g1303 293 Gene3D - 161 235 IPR036638 GO:0046983(InterPro)
Tan05g1303 293 SMART finulus 170 220 IPR011598 GO:0046983(InterPro)
Tan05g1303 293 MobiDBLite consensus disorder prediction 87 122 - -
Tan05g1303 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983(InterPro)
Tan05g1303 293 MobiDBLite consensus disorder prediction 85 173 - -
Tan05g1303 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 234 IPR036638 GO:0046983(InterPro)
Tan05g1303 293 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983(InterPro)
Tan05g1303 293 Coils Coil 88 137 - -
Tan05g1303 293 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Tan05g1303 293 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 88 256 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0786 Tan-Chr2:7608675 Tan05g1303 Tan-Chr5:15486171 1.30E-44 dispersed
Tan05g1303 Tan-Chr5:15486171 Tan11g1640 Tan-Chr11:15877923 1.20E-35 dispersed
Tan05g1302 Tan-Chr5:15486171 Tan05g1303 Tan-Chr5:15486171 2.10E-149 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27497 PF00010 HLH 2.10E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1303 - - - 0.0