Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1313 ATGGCCTCCTCGTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCCTGGGCCACTGATGGTATTACCTTAGAGAAGGCTTTCTCTCCCTTTGGCGAGATCATTGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGTTTTGGATTCGTGACATTTGCTCATGAGGAGTCTATGAGAAGTGCTATTGAAGCGATGAACGGTCATAACCTTGACGGCCGAAGTATCACCGTCAACGAGGCTCAACAAAGAGGTGGTGGCGGCGGCGGTGGTGGTTACAACCGTGGTGGTGGTGGTGGAGGTGGAGGATATGGCGGAAGACGCGAAGGTGGTGGTGGTGGTGGTGGATACCGCGGAGGCGGTGGCTACGGTGGTGGTGGAGGCGGATACGGAGGAGGTGGTTACGGTGGTGGACGTGACCGTGGATACGGCGGCGGCGGCGGCGATGGTGGCTCCCGTTACTCGAGCCGAGGCGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAG 519 58.38 MASSSVEYRCFVGGLAWATDGITLEKAFSPFGEIIEAKIVNDRETGRSRGFGFVTFAHEESMRSAIEAMNGHNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGGYGGRREGGGGGGGYRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSSRGGGGGSEGGWRN 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16044031 16046106 - Tan0019603.1 Tan05g1313 752621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1313 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723(InterPro)
Tan05g1313 172 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676(InterPro)
Tan05g1313 172 SMART rrm1_1 9 82 IPR000504 GO:0003723(InterPro)
Tan05g1313 172 MobiDBLite consensus disorder prediction 131 172 - -
Tan05g1313 172 Gene3D - 2 109 IPR012677 -
Tan05g1313 172 CDD RRM2_NsCP33_like 9 84 IPR048289 -
Tan05g1313 172 Pfam RNA recognition motif 11 79 IPR000504 GO:0003723(InterPro)
Tan05g1313 172 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 164 IPR051106 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1313 K13195 - - csv:101211933 148.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1277 Tan-Chr2:34863004 Tan05g1313 Tan-Chr5:16044031 5.60E-23 dispersed
Tan05g1313 Tan-Chr5:16044031 Tan05g2362 Tan-Chr5:74980524 7.80E-19 dispersed
Tan05g1313 Tan-Chr5:16044031 Tan09g2044 Tan-Chr9:70948428 1.20E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38