Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1325 ATGCTAGGTACAACTCTAGCTTATTCAAGGATGAAAATTAACATATATATGTTAACTTTAGGATTCAAGATTCAAAATTCTAAGGTGGGCTGGGCCGTTGAGCCGTGGACAAATATTAATTTCTTAGTCCCTTTTGGTTTCATAGTGAAGCTCGAGAACACTGCACCATTCCCACAAGCTTCGCTCGAAATGGTAGTAGCTTCAGCTTTTACTGCATCTCTCAGTTTCTCTGTATCTTCGCACAGTAGAACGTCATCCATTCCTCAACTTTCTCGAAGAAATTCACACAGGTCGACAGTTTCTGCCTTGCCGAGACCCTATGGCGACTCTTCAACAATTGGATTATCGAGTAAAACAATCGGGGCACCTTTAAACCTTGACGATAAAGATTTTCTTCACGCTAGTACAAGTTATGGACCTATAGTGGCCAAGAAAGGCAATCCACCAATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGGATCTCTCTTCTGTGTTGTTTAGGAATCGTATCATATTTATTGGTCAACCTGTCAACTCCATCGTGGCACAGCGAGTCATATCACAGCTTGTGACTCTAGCAACCATCGACGAGGATGCAGATATCCTGGTATATCTGAATTGCCCTGGTGGAAGTACATACTCGGTGTTAGCAATTTATGATTGTATGTCTTGGATAAAGCCTAAGGTTGGCACAGTGTGCTTTGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTACGCCATGCCAAATTCTCGAATTATGATACATCAACCACAAAGTGGATGCGGGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTTGACATGATGTATGCTGCATTTACTGGCCAACCTATAGAGAAAGTACAACAATACACGGAGAGGGATCGATTTTTGTCTGTTGCTGAGGCTTTGGAGTTTGGGCTTATCGACGGTGTGCTGGAAACAGAATACTGA 1014 43.89 MLGTTLAYSRMKINIYMLTLGFKIQNSKVGWAVEPWTNINFLVPFGFIVKLENTAPFPQASLEMVVASAFTASLSFSVSSHSRTSSIPQLSRRNSHRSTVSALPRPYGDSSTIGLSSKTIGAPLNLDDKDFLHASTSYGPIVAKKGNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSIVAQRVISQLVTLATIDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPIEKVQQYTERDRFLSVAEALEFGLIDGVLETEY 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16729575 16734782 - Tan0011672.1 Tan05g1325 752633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1325 337 FunFam ATP-dependent Clp protease proteolytic subunit 142 337 - -
Tan05g1325 337 PRINTS Clp protease catalytic subunit P signature 162 177 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Tan05g1325 337 PRINTS Clp protease catalytic subunit P signature 233 250 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Tan05g1325 337 PRINTS Clp protease catalytic subunit P signature 311 330 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Tan05g1325 337 PRINTS Clp protease catalytic subunit P signature 254 273 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Tan05g1325 337 PRINTS Clp protease catalytic subunit P signature 202 222 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Tan05g1325 337 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 150 336 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Tan05g1325 337 ProSitePatterns Endopeptidase Clp histidine active site. 255 268 IPR033135 -
Tan05g1325 337 Gene3D - 147 337 - -
Tan05g1325 337 MobiDBLite consensus disorder prediction 87 106 - -
Tan05g1325 337 CDD S14_ClpP_2 162 332 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Tan05g1325 337 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 101 336 IPR023562 GO:0004176(PANTHER)|GO:0004252(PANTHER)|GO:0006515(PANTHER)|GO:0009368(PANTHER)|GO:0051117(PANTHER)
Tan05g1325 337 Pfam Clp protease 162 335 IPR023562 -
Tan05g1325 337 SUPERFAMILY ClpP/crotonase 161 335 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1325 K01358 - - csv:101213940 462.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31