Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1344 ATGGAGGACTGCATCAGCAGCGATGAGGACTATTATGACTCCGATCGAGAGTCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTCCAAAAGGTCCGGCGACTAAGGTTATTACAAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTAATGGACATGCTATCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCGGTACTTGTGGAGAAAGGGAGAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATGAAAGTAATAGTTCTTCTGAGCCTTCCTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGATTGTAGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCTCATAAATGTAATGCTATTTGTGATGAAGCTGTAGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATCGAGGATAACAAGAGAGTCAAATGGTGTCCAAGTACCCCTCACTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCCTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACAGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCACAAACCTGTCGAGAAGAATGGTGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAACACACTTGGTCAAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAGTCAGAGCAGAAAGCTGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAGAGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCCTTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACCCAGGAGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGACCAATACACTAAAGATAAAGTAATGGAGATAAGGATGCAAGTCATCAACCTGTCAGTTATCACTGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATTCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAACTTTCTGCTTGTTGGAACGGAAAAGCAAATACTACTGACAAATATCTGCCATCAGACTGTGGTACAAGTGTGTCCCTTGTCGAAAATATGCATTCATTACCTACGACTCTAAATCAAGATCGTTGCACATTGCTTGGTCTTTCTTCCATCAGATAA 1713 42.21 MEDCISSDEDYYDSDRESLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRNHLFATAGVTMIENESNSSSEPSSMVMCDICMEEVHGNDATRVDCSHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNGKANTTDKYLPSDCGTSVSLVENMHSLPTTLNQDRCTLLGLSSIR 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17761306 17766766 - Tan0012979.2 Tan05g1344 752652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1344 570 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Tan05g1344 570 CDD BRcat_RBR_ANKIB1 197 261 - -
Tan05g1344 570 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Tan05g1344 570 CDD RING-HC_RBR_TRIAD1 117 170 - -
Tan05g1344 570 CDD Rcat_RBR_ARI1-like 273 326 - -
Tan05g1344 570 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
Tan05g1344 570 SUPERFAMILY RING/U-box 191 259 - -
Tan05g1344 570 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Tan05g1344 570 Pfam IBR domain 272 314 IPR054694 -
Tan05g1344 570 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
Tan05g1344 570 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Tan05g1344 570 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Tan05g1344 570 SUPERFAMILY RING/U-box 260 325 - -
Tan05g1344 570 SUPERFAMILY RING/U-box 114 202 - -
Tan05g1344 570 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Tan05g1344 570 Pfam Ariadne domain 329 552 IPR045840 -
Tan05g1344 570 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 75 361 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Tan05g1344 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Tan05g1344 570 Gene3D - 248 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1344 K11968 - - csv:101205066 1071.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1344 Tan-Chr5:17761306 Tan05g1346 Tan-Chr5:17761306 0.00E+00 dispersed
Tan05g1343 Tan-Chr5:17761306 Tan05g1344 Tan-Chr5:17761306 0.00E+00 tandem
Tan05g1344 Tan-Chr5:17761306 Tan05g1345 Tan-Chr5:17761306 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g1343 . 164 589 ARIADNE family AT4G34370 71.7 1.9e-183 639.4
Tan05g1345 . 164 593 ARIADNE family AT4G34370 71.1 4.8e-182 634.8
Tan05g1346 . 164 543 ARIADNE family AT4G34370 77.1 4.2e-178 621.7
Tan05g1347 . 164 543 ARIADNE family AT4G34370 77.1 4.2e-178 621.7
Tan05g1344 . 164 542 ARIADNE family AT4G34370 77.0 2.1e-177 619.4
Tan05g1345 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1346 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1347 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1343 . 58 542 ARIADNE family AT2G16090 76.8 5.7e-224 774.2
Tan05g1344 . 58 542 ARIADNE family AT2G16090 76.8 5.7e-224 774.2
Tan05g1343 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1345 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1346 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1347 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1344 . 38 522 ARIADNE family AT3G27710 62.7 3.5e-182 635.6
Tan05g1343 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1344 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1345 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1346 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1347 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan06g1608 . 56 530 ARIADNE family AT1G05890 74.5 1.2e-220 763.5
Tan06g1609 . 56 496 ARIADNE family AT1G05890 75.3 1.6e-207 719.9
Tan08g1189 . 4 348 ARIADNE family AT1G05890 70.1 1.4e-155 547.4
Tan06g1608 . 53 584 ARIADNE family AT1G65430 71.2 3.5e-241 831.6
Tan06g1609 . 53 496 ARIADNE family AT1G65430 75.9 6.0e-217 751.1
Tan08g1189 . 3 403 ARIADNE family AT1G65430 73.3 1.6e-185 646.7
Tan06g1608 . 53 449 ARIADNE family AT2G31780 57.6 5.9e-143 505.0
Tan06g1609 . 53 449 ARIADNE family AT2G31780 57.6 5.9e-143 505.0
Tan08g1189 . 4 267 ARIADNE family AT2G31780 54.2 8.3e-89 325.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46