Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1345 | ATGGAGGACTGCATCAGCAGCGATGAGGACTATTATGACTCCGATCGAGAGTCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTCCAAAAGGTCCGGCGACTAAGGTTATTACAAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTAATGGACATGCTATCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCGGTACTTGTGGAGAAAGGGAGAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATGAAAGTAATAGTTCTTCTGAGCCTTCCTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGATTGTAGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCTCATAAATGTAATGCTATTTGTGATGAAGCTGTAGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATCGAGGATAACAAGAGAGTCAAATGGTGTCCAAGTACCCCTCACTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCCTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACAGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCACAAACCTGTCGAGAAGAATGGTGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAACACACTTGGTCAAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAGTCAGAGCAGAAAGCTGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAGAGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCCTTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACCCAGGAGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGACCAATACACTAAAGATAAAGTAATGGAGATAAGGATGCAAGTCATCAACCTGTCAGTTATCACTGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATTCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAACTTTCTGCTTGTTGGAACGGAAAAGCAAATACTACTGACAAATATCTGCCATCAGACTGTGGTACAAGTGGTAAAGTGGAGAGAGGATTGTCAGAACGCGATCGACTGACTGGCTTGAATTCCGACGAGAACGGTTGCTCTTCTAGGAAGCGTGCCAGAGCGGACGTTGTTACTGGCAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGATAGAAACTGA | 1782 | 42.93 | MEDCISSDEDYYDSDRESLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRNHLFATAGVTMIENESNSSSEPSSMVMCDICMEEVHGNDATRVDCSHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNGKANTTDKYLPSDCGTSGKVERGLSERDRLTGLNSDENGCSSRKRARADVVTGNFFDLNLPAEVVDRN | 593 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 17761306 | 17766766 | - | Tan0012979.3 | Tan05g1345 | 752653 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1345 | 593 | CDD | BRcat_RBR_ANKIB1 | 197 | 261 | - | - | |
Tan05g1345 | 593 | Gene3D | - | 248 | 496 | - | - | |
Tan05g1345 | 593 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 204 | IPR013083 | - | |
Tan05g1345 | 593 | SUPERFAMILY | RING/U-box | 260 | 325 | - | - | |
Tan05g1345 | 593 | ProSiteProfiles | TRIAD supradomain profile. | 115 | 329 | IPR044066 | - | |
Tan05g1345 | 593 | FunFam | RBR-type E3 ubiquitin transferase | 113 | 204 | - | - | |
Tan05g1345 | 593 | CDD | RING-HC_RBR_TRIAD1 | 117 | 170 | - | - | |
Tan05g1345 | 593 | CDD | Rcat_RBR_ARI1-like | 273 | 326 | - | - | |
Tan05g1345 | 593 | SUPERFAMILY | RING/U-box | 191 | 259 | - | - | |
Tan05g1345 | 593 | ProSiteProfiles | Zinc finger RING-type profile. | 119 | 167 | IPR001841 | - | |
Tan05g1345 | 593 | Pfam | IBR domain | 272 | 314 | IPR054694 | - | |
Tan05g1345 | 593 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 49 | 83 | IPR048962 | - | |
Tan05g1345 | 593 | FunFam | RBR-type E3 ubiquitin transferase | 248 | 496 | - | - | |
Tan05g1345 | 593 | SMART | ibrneu5 | 190 | 252 | IPR002867 | GO:0008270(InterPro) | |
Tan05g1345 | 593 | SMART | ibrneu5 | 260 | 325 | IPR002867 | GO:0008270(InterPro) | |
Tan05g1345 | 593 | SUPERFAMILY | RING/U-box | 114 | 202 | - | - | |
Tan05g1345 | 593 | Pfam | IBR domain, a half RING-finger domain | 190 | 252 | IPR002867 | GO:0008270(InterPro) | |
Tan05g1345 | 593 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 75 | 361 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Tan05g1345 | 593 | Pfam | Ariadne domain | 329 | 593 | IPR045840 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1343 | Tan-Chr5:17761306 | Tan05g1345 | Tan-Chr5:17761306 | 0.00E+00 | dispersed | |
Tan05g1345 | Tan-Chr5:17761306 | Tan05g1347 | Tan-Chr5:17761306 | 0.00E+00 | dispersed | |
Tan05g1344 | Tan-Chr5:17761306 | Tan05g1345 | Tan-Chr5:17761306 | 0.00E+00 | tandem | |
Tan05g1345 | Tan-Chr5:17761306 | Tan05g1346 | Tan-Chr5:17761306 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1345 | K11968 | - | csv:101205066 | 1145.57 |