Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1355 ATGAAAGCTGGATCAGAGAATGGATGGCATTCCTTCAAGTCTCTTCATTTTAGAGGTAAACCAGCCAACAGTTTGTGCTTGCTTCAGAAGGTGAAGAACTCTGCCAGTACTCCGGGCGAAACTCCAGTCTATCTCAATGTGTATGACTTAACACCCGCAAATGGCTATGTCTACTGGGCTGGCCTCGGCATCTTTCACTCTGGTATAGAAGTTTATGGCGTTGAGTATGCCTTTGGAGCCCACGACTACCCGACAAGTGGTATCTTCGAGGTTGAACCCCGGACATGCCCTGGCTTCAAGTTTAGGAAGGCAATTTATATTGGTACAACTTGCTTGGACCCAATCCAGGTTAGAGATTTTATGGAGCGTCAAGCTGCAAACTATCATGGCGATTCATATCACTTGATTGTGAAGAATTGCAACCATTTCTGTGAGGATATATGTAGAAAGCTCACCGGAAAATGCATACCGAAATGGATTAATCGACTTGCAAGAATAGGTTCAAAATGCAACTGCATACTCCCAAAAGCACTCAAGGCCACGACCGTGCAACACAACCCGAGATTTGAGGGACAGGACAGTGAAAAGAAAAGGCTGAGAAGTGGCTTCAGTTGCTTATCCTCAATCTCCATGAATCAGAAGGAAGTTTCAATATCTTCACTGTTTCTACACTCCCACTATAAAGGCTGCCTACCTCCATGGGAACTGAAAAGATCCAAAAGTTGGTCGTTCAAGTAA 738 44.58 MKAGSENGWHSFKSLHFRGKPANSLCLLQKVKNSASTPGETPVYLNVYDLTPANGYVYWAGLGIFHSGIEVYGVEYAFGAHDYPTSGIFEVEPRTCPGFKFRKAIYIGTTCLDPIQVRDFMERQAANYHGDSYHLIVKNCNHFCEDICRKLTGKCIPKWINRLARIGSKCNCILPKALKATTVQHNPRFEGQDSEKKRLRSGFSCLSSISMNQKEVSISSLFLHSHYKGCLPPWELKRSKSWSFK 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18005902 18009320 + Tan0018430.1 Tan05g1355 752663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1355 245 ProSiteProfiles PPPDE domain profile. 41 178 IPR008580 GO:0008233(InterPro)
Tan05g1355 245 SMART DUF862_2a 41 179 IPR008580 GO:0008233(InterPro)
Tan05g1355 245 Pfam PPPDE putative peptidase domain 42 177 IPR008580 GO:0008233(InterPro)
Tan05g1355 245 Gene3D PPPDE domains 36 194 IPR042266 -
Tan05g1355 245 PANTHER DESUMOYLATING ISOPEPTIDASE 39 198 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1355 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0834 Tan-Chr2:8871414 Tan05g1355 Tan-Chr5:18005902 1.40E-109 dispersed
Tan02g0835 Tan-Chr2:8871414 Tan05g1355 Tan-Chr5:18005902 2.20E-83 dispersed
Tan02g1941 Tan-Chr2:87993150 Tan05g1355 Tan-Chr5:18005902 2.60E-88 dispersed
Tan04g2518 Tan-Chr4:84252697 Tan05g1355 Tan-Chr5:18005902 2.00E-54 dispersed
Tan05g1355 Tan-Chr5:18005902 Tan07g1881 Tan-Chr7:70370497 2.70E-57 dispersed
Tan05g1355 Tan-Chr5:18005902 Tan05g1356 Tan-Chr5:18005902 8.80E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000619 5 5 3 1 3 3 4 3 3 3 3 2 4 3 3 2 2 6 4 2 3 3 3 3 3 3 3 11 5 2 103