Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1359 ATGCCGATCTCTCCTTCTCCTTCTCCTTCTCCTTCCCCTTCCACCTCCTCCTCCGCCGCCAATTTCCCTCCCCCTTCTTCCTTACAGCCGGCAAAGCTCCCCGTCGACTTCAGCCCTCCTTTAATCGCCATGGTCGTCGTCATCGCCACCGCCTTTCTCATAGTCACTTACTCCCGTCTCATCTCCCGCCACCTCATCCCTCCGATTATCCATCTCCTCCGCCGCCACCGCCGCCGCTGGCGGAGGTGGCGGCGAAGGCGACGGCGCGCCCGATCTTACCTCCCGTCTTCCTCTGGCGGCGACCTGGATTCTCTCCCTTTCGATTCGCCTTTCTTCGAACCTACCGATGGCTTCCACGTGTTGTCGCCGTACGGCCTCGACGAATCCGTCATCAAGACGATTCCGCTCTCCGTCTACACCGCCAAGAGTCGCGACCGTGAGTGCGCCGTTTGCCTTCTGGAGTTTGAAGACGACGATTACGTCCGTACGCTTCCGATTTGTTCTCACGCGTTTCATGTTGATTGTATAGATGTATGGCTTAGGTCACACGCCAACTGTCCGCTCTGTCGCGCCGTGGTTTTCCGTCCCGAATCTCCCTTCACGCCGCTCATGGCTGCCAGAATCCGCCCCAGCCTCGACGATACGATCTTACGGAGCATCGTATTGGAGCCGCTCGCGGAAGGTGTTATACCTAATCGAGACTCTTCTTATCACGCGACGGAATCCGAGATCACGCCGTGCGTTGATGAACCGAGGAATAGCAATTCGGCGGAGGATCAAATCAACGGGCGAGATTTCTTGCTGAAGCGATCGTATTCGTTCGGATTCGAACGGAGCTTGGCGTCGGAGAGAATGATTCTTGAACCGGCGACGGCGTCGCCATGGAGGTACCGCCGTGGAAACTTCTGGAGCAAACGGCCGTCGCCGTTCGGATCTCTACCGAAGGCGAGAGTGTTCTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGGAGAGGAGGATTCTTTCCACTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCGTCGAGACGGAGCAAGTCAATGACGAGTCCAATGTTTCTCCGATCATCGGTGGCCAACGGAGGTGCAGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGAGATCCGGAGGCGTTACTGTCACCGGAGAGATTCAACAGACGATGA 1212 57.43 MPISPSPSPSPSPSTSSSAANFPPPSSLQPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPIIHLLRRHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPFDSPFFEPTDGFHVLSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPLMAARIRPSLDDTILRSIVLEPLAEGVIPNRDSSYHATESEITPCVDEPRNSNSAEDQINGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGNFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVANGGAAAFSSSRLRCGDPEALLSPERFNRR 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18175885 18178029 + Tan0021191.1 Tan05g1359 752667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1359 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 194 IPR013083 -
Tan05g1359 403 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Tan05g1359 403 CDD RING-H2_EL5-like 147 190 - -
Tan05g1359 403 FunFam RING-H2 finger protein ATL65 119 194 - -
Tan05g1359 403 SMART ring_2 148 189 IPR001841 -
Tan05g1359 403 Pfam Ring finger domain 147 190 IPR001841 -
Tan05g1359 403 SUPERFAMILY RING/U-box 144 196 - -
Tan05g1359 403 PANTHER RING-H2 FINGER PROTEIN ATL16 16 234 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Tan05g1359 403 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1359 Tan-Chr5:18175885 Tan07g1986 Tan-Chr7:71588916 5.10E-21 dispersed
Tan05g1359 Tan-Chr5:18175885 Tan10g0692 Tan-Chr10:5696187 1.50E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1359 - - - 0.0