Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1365 ATGGCTGGGCTTCTGAAAAAGTTTTTTCACGAGAAGCCTTCTTCTCCGGTTGGAGATGAGGATTTTAATCCTGAATATTCTTTTGCAATCGAGTATACAGGTCCTGGAATCAATTACGATATTCCCCGTGCAGTTCCTATCAATGTCGATTATATTCCAACTGCTTCTGTAGTTGTTTCATCGTCTCAGTTCAGGGATGATCTATCATCGCTGCCAGTGATACAACCCATCGTCGAGAAATTTAGGAGGGGCTCAAGTTTTAGTCCCAATTATGTAATTTCTTCAGCCCCTGAAATCCAGGAAGATGGGCCTGTTTGCCTCGATTCCAATAAGAAAGATAATGGGGAAGGTGAATGTAATATCAATTCATGTGATGGAATTGAAAGTTCTGGTGAGTTTGAGAATTTAAATAAGCTAAGGGGAAGATTAGAAGGTGGGTTAGAATCACTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTACACGAATTCCAGCGATTCGGAGTCGGCAGAATCAGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGAAAGAGGGGAAGAGGAAGTTGACAATGAAACTCAGGCTCGGCATGGCAGAAGGCCATCAGCTGTTACTTTTCTCGATCCCCATTCGAGCAACACAATTTCTGAAGAGACAGAATCAAGTCAATTTGAGGCTGAAAGTATCCATGAGATGCCAAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTATTACTGCCTTAAAGGAAACCGTTTCACTGAAAAGGTAGCGTGTATTGTTTGTGGAGCCAAATATTGTACTGGCTGTGTGATAAGAGCAATGGGACCAATGCCCGAAGGAAGAAAGTGTATCACTTGTATTGGGTTCAGGATTGATGAATCCAGAAGAGAGAACCTGGGTAAATACTCTAAATTGCTCAAGAGGTTGTTTACTGACTCGGAAGTCGAGAACATACTGACGCGGGAAAAAGAGTGTGAAGTAAATCAGCTACCTGCAAGACTTGTTTATGTCAACGACGATCCTTTAAGTCGACAGGAGCTACTTTTGTTGCGAAGTTGCCGGAAGCCACCAAAGAATCTAAAACCCGGACGATATTGGTATGACAAAGAATCAGGCTTCTGGGGAAAGGAAGGACGTGGACCGTGTCAGATAGTTAGCCCCCAGCTAGAGGTCGGAGGTCGGATCAAGAGGGATGCTAGTAATGGCAACACAAACGTGTGCATCAATAATCGAGAGATCACTAAGAAAGAGCTCCGGATACTGAAGATGGCTGGAGTACCTTGTGAAGGAAGACCTTCTTTTTGGGTTAGTGCAGATGGATCATATCAGGAAGAAGGAATGAACAATGGGGGGAAAATATGGGACAAGACTAGAACGAAACTTGCATGTGCCCTTTTTTCTTTGCCTATTCCTTCTAATTCTGTTCCTTCTGGAGAGGAAAAAGTGGACAAAGCTAGTTCTGTTTCTCCTGAGCAGAAAATGCTTCATAAACTTCTACTTGTTGGCCACGACAAATCTGGCACAAGTACCATATTCAAGCAGGCCAAGCAAATATATAAAGTTCCTTTCTCTGACGACGAGCGTCAAACCATTAAATTCCTGATCCAAAGAAAATTATACTGGTACATTAGTATACTACTGGAAGGACGGGAACGTTTTGAAGAAGAGGTTTTGATGGATGAGAAGAATAAGCAACCTATGAATGATCCGTCCACCTCATCAGCATCAGGGAATGAAGTTCAGTTCGAGCGTAAAACCACCTATTCCCTTGGCCCTAAACTGAAAGTATTCGCAGATTGGCTTCTTGAAATTGTGGTGTCGGGCAACTTTGAAACCATATTCCCGGCAGCTACCCGTGTGTATGCCCAATCGGTGGAAGAGTTATTGAAGGCTGAAGCCTTTCAAGCCACATACAGTAGAAGGAATGAACTAGAAATGCTCCCAAGAGTTGCAACTTATTTCCTTGATCGGGTGAGTTTACATTTTTGGTCATCATAG 2001 43.03 MAGLLKKFFHEKPSSPVGDEDFNPEYSFAIEYTGPGINYDIPRAVPINVDYIPTASVVVSSSQFRDDLSSLPVIQPIVEKFRRGSSFSPNYVISSAPEIQEDGPVCLDSNKKDNGEGECNINSCDGIESSGEFENLNKLRGRLEGGLESLEIKNEEDFQGYTNSSDSESAESGLSSSSGIFAERGEEEVDNETQARHGRRPSAVTFLDPHSSNTISEETESSQFEAESIHEMPRAERKGKKGSCYYCLKGNRFTEKVACIVCGAKYCTGCVIRAMGPMPEGRKCITCIGFRIDESRRENLGKYSKLLKRLFTDSEVENILTREKECEVNQLPARLVYVNDDPLSRQELLLLRSCRKPPKNLKPGRYWYDKESGFWGKEGRGPCQIVSPQLEVGGRIKRDASNGNTNVCINNREITKKELRILKMAGVPCEGRPSFWVSADGSYQEEGMNNGGKIWDKTRTKLACALFSLPIPSNSVPSGEEKVDKASSVSPEQKMLHKLLLVGHDKSGTSTIFKQAKQIYKVPFSDDERQTIKFLIQRKLYWYISILLEGRERFEEEVLMDEKNKQPMNDPSTSSASGNEVQFERKTTYSLGPKLKVFADWLLEIVVSGNFETIFPAATRVYAQSVEELLKAEAFQATYSRRNELEMLPRVATYFLDRVSLHFWSS 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18481753 18487717 + Tan0015616.4 Tan05g1365 752673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1365 666 ProSiteProfiles G-alpha domain profile. 495 666 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Tan05g1365 666 Gene3D - 525 662 IPR011025 GO:0007165(InterPro)
Tan05g1365 666 PANTHER OS01G0977800 PROTEIN 11 471 IPR053057 -
Tan05g1365 666 MobiDBLite consensus disorder prediction 157 179 - -
Tan05g1365 666 MobiDBLite consensus disorder prediction 206 222 - -
Tan05g1365 666 SUPERFAMILY Transducin (alpha subunit), insertion domain 524 659 IPR011025 GO:0007165(InterPro)
Tan05g1365 666 MobiDBLite consensus disorder prediction 157 234 - -
Tan05g1365 666 SUPERFAMILY FYVE/PHD zinc finger 229 288 IPR011011 -
Tan05g1365 666 MobiDBLite consensus disorder prediction 183 197 - -
Tan05g1365 666 Pfam G-protein alpha subunit 491 659 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1365 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1363 Tan-Chr5:18481753 Tan05g1365 Tan-Chr5:18481753 0.00E+00 dispersed
Tan05g1364 Tan-Chr5:18481753 Tan05g1365 Tan-Chr5:18481753 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42