Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1371 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTCTCAAAAGGAAAATGCCGCGCCCTTATTTTCACAAGCTCGTTCTCTCCTCCACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACCTTTCTCAGGATGATCAGGGATGAGCTTTCTACAGTTGCAACACTTACTGTTCCTGACGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGTGGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATAAGGGTTGGGTTTTTATTAGTATTCAGATATGAGGGGAACTCATCATTTTGTGTTTTTATCTTCAATCTTAATACATCTGAAATAAACTATCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCATTCAAAACCGAATCTTTGAAGAGATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCTTGAATTCTGGTTCTTTACGAAATAAGCTATTTGGTGACGAATGGAATCTACACCAATCAAAATCTGCAAGTACGTTGCAAGCTGAATATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGTACACAGAATTAAAAAAAGTGGAGGCAAAAAGCGGAAAATTGATTCTAGCGAGCACCGTCCATCTGCTCATAGTGAAGAGTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTCGAGCCCGCTAATCCCTTCTGTAGGGTCGTCTTGCGACCATCATATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGATGGGAGACAGTGGCCAGTCCGGTGTCTTTATAAAGTTGGTAGAGCCAAGTTAAGTCAAGGATGGTATGAGTTTTGCCTGGAAAACAATTTAGGGGAGGGTGATGTTTGCGTGTTTGAGCTTCTCAGGATGAGAGAGATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGACGCTGGACGAATGGTAAACCCGAATCCTCCCAGCATGATGAATCCACCCCCGCTGCGAAGTGTTAACCAAATTAAGCTGATCAGAAATTAG 1233 41.77 MTDFSAFRTGGLKRKMPRPYFHKLVLSSTIQARKLRIPETFLRMIRDELSTVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSLNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDVHRIKKSGGKKRKIDSSEHRPSAHSEELGDIRFRFYESASARKRTVTAEERERAINAAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEDAGRMVNPNPPSMMNPPPLRSVNQIKLIRN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18701653 18705212 - Tan0018531.1 Tan05g1371 752679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1371 410 Gene3D - 13 114 IPR015300 -
Tan05g1371 410 PANTHER B3 DOMAIN-CONTAINING 18 364 IPR050655 -
Tan05g1371 410 SMART B3_2 284 379 IPR003340 GO:0003677(InterPro)
Tan05g1371 410 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Tan05g1371 410 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Tan05g1371 410 SUPERFAMILY DNA-binding pseudobarrel domain 279 380 IPR015300 -
Tan05g1371 410 CDD B3_DNA 282 377 IPR003340 GO:0003677(InterPro)
Tan05g1371 410 Pfam B3 DNA binding domain 22 111 IPR003340 GO:0003677(InterPro)
Tan05g1371 410 Pfam B3 DNA binding domain 286 377 IPR003340 GO:0003677(InterPro)
Tan05g1371 410 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Tan05g1371 410 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Tan05g1371 410 Gene3D - 261 381 IPR015300 -
Tan05g1371 410 MobiDBLite consensus disorder prediction 221 241 - -
Tan05g1371 410 ProSiteProfiles B3 DNA-binding domain profile. 284 379 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0475 Tan-Chr1:4360956 Tan05g1371 Tan-Chr5:18701653 3.00E-39 dispersed
Tan05g1369 Tan-Chr5:18665961 Tan05g1371 Tan-Chr5:18701653 2.00E-57 dispersed
Tan05g1371 Tan-Chr5:18701653 Tan07g1051 Tan-Chr7:29204031 1.90E-34 dispersed
Tan05g1370 Tan-Chr5:18665961 Tan05g1371 Tan-Chr5:18701653 4.70E-53 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27500 PF02362 B3 5.60E-18 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1371 - - - 0.0