Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1380 ATGCATTATTTGAATCTCCTTCTCTTCTTCCTCTTCCTTTCTTCCACAGTAACCAAAACTCGATCAGATCCGCCGCCGTCGTCTGGTGGTAAGCACTTCGTTCTGATTCACGGAGCCTGCCTTGGCGCCTGGTCATGGTACAAGCTAGCGACGCTGCTGCGCTCGGCCGGCCACCGCGTGACGGCACTGGACATGGCGGCTGCCGGAATTGATCCGAGGGAGGCGGAGGGTCTTAAATCGTTCTCCGATTATGTCCAGCCGTTGACGGATTTCATGGCGGAGGTGGCGGCGAAGGAGAAGGTAATCCTCGTGGGGCACAGCCAAGGCGGGCTGTGCATCTCGAAAGCGATGGAGGATTTTCCGGATAAAATTTCTGTGGCTGTTTTTGTTGTTGCAGCCATGCCTGGCCCATCCCTCAAAGCTTCCTTTCTGCTTCAACAGTTTCGCGAGAGGATAGACTTTGGGCCGGATACCCGTTATACATTCGCTAATGGGCCTAAAAACCCTCCAACAACTTTGACATTCGGCCCTCTTTTCTCGGCTATGAAACTATTCAACAGGAGTCCCAAAGAGGACTTGACACTGGGCAACACGTTGATGAGAGCAACCCGTTTGTTTGTGGGACAACAATGGAGCAAGGATCTACGTTTGACGACAGAGAGGTATGGTTCTGTCAAAAGAGTTTTTGTTGTTTCAGATAAGGATAAGGTTATAAAAAAGAGCTTCCAACAATGGGTGATTAAAAGAAATCCACCTACGGCTGTGATGGAAGTTAGAGGATCAGATCATATGGTGATGATGTCCAAGCCGTTCGATCTCTTCCACAAACTTTGCCACGTTGCTCAACACTATTCTTAA 858 49.65 MHYLNLLLFFLFLSSTVTKTRSDPPPSSGGKHFVLIHGACLGAWSWYKLATLLRSAGHRVTALDMAAAGIDPREAEGLKSFSDYVQPLTDFMAEVAAKEKVILVGHSQGGLCISKAMEDFPDKISVAVFVVAAMPGPSLKASFLLQQFRERIDFGPDTRYTFANGPKNPPTTLTFGPLFSAMKLFNRSPKEDLTLGNTLMRATRLFVGQQWSKDLRLTTERYGSVKRVFVVSDKDKVIKKSFQQWVIKRNPPTAVMEVRGSDHMVMMSKPFDLFHKLCHVAQHYS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18933012 18938722 + Tan0001706.1 Tan05g1380 752688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1380 285 PANTHER METHYLESTERASE FAMILY MEMBER 30 283 IPR045889 GO:0009694(PANTHER)|GO:0009696(PANTHER)|GO:0080030(PANTHER)|GO:0080031(PANTHER)|GO:0080032(PANTHER)
Tan05g1380 285 Gene3D alpha/beta hydrolase 26 285 IPR029058 -
Tan05g1380 285 Pfam alpha/beta hydrolase fold 32 270 IPR000073 -
Tan05g1380 285 SUPERFAMILY alpha/beta-Hydrolases 25 274 IPR029058 -
Tan05g1380 285 FunFam (S)-hydroxynitrile lyase 28 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1380 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0874 Tan-Chr2:9815797 Tan05g1380 Tan-Chr5:18933012 5.20E-79 dispersed
Tan03g1486 Tan-Chr3:71246427 Tan05g1380 Tan-Chr5:18933012 4.50E-56 dispersed
Tan03g1493 Tan-Chr3:71329977 Tan05g1380 Tan-Chr5:18933012 2.60E-58 dispersed
Tan05g1380 Tan-Chr5:18933012 Tan10g2040 Tan-Chr10:64678608 9.20E-41 dispersed
Tan05g2684 Tan-Chr5:78490348 Tan05g1380 Tan-Chr5:18933012 2.20E-69 transposed
Tan11g0359 Tan-Chr11:2880185 Tan05g1380 Tan-Chr5:18933012 1.30E-36 transposed
Tan03g1482 Tan-Chr3:71171712 Tan05g1380 Tan-Chr5:18933012 2.50E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112