Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1392 ATGATTTCAATTTTACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAGTCTCTTGCAAAACACATTAGTAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATCTCGTCCACCAAAAAAGTAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCCCTCCGCTCCTCTTCAAAGCTTGTTGTCAGTGCTGATGGGAAGAAAGTTAGGCGTAAGCATCCATTCACGGACAAGGACAAAGAGGAACTTCTGTCCCGCACAGTCGTCGTTGAGAATTTGCCCGACAATCACTCGCATCACAACCTGGAGAAAATATTTAGTGTGATTGGAAGTGTGAAGACCATCCGAATCTGCCATCCCCCGGAATCAAATCCCTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACGGTAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAACGATGAGAGAAACTGGAGGAAAGGGCTCCGAGTAAGGTTATTGCTCAGACGCTCGCCAAAGTCGGTTCTGAAGACTCGAAAATCAGAATTTGAAAGTATTCTGGATGAAGATGATTCACCATCTCCTGTATCCATTGAACCAGAGTCCTCTCTGCCAAATATCGCTGAACTGATTGCCGATTGCAATTCTGAGGAGAACTCTACGTCATCTAAGAAGGGATGGGTTCGAGGCCGTGGGAAGGGCCGTGGACGAATTCATAGCCATCTCGATCGTAGTTACAGCTTGCCTGTTACAGCTATGCAATCGAGTAGCCAGGTTCTTTGTGAAGCGTCTTCCAAACTCACTTCAAAGAGTCCGAGAATGCCTGACGGGACTAAAGGTTTCACCATGGGACGAGGCAAGCCATTAAGCTCTAAACCTGTATTTTGA 918 44.88 MISILQVEYQFSDMSLLANESLAKHISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVRRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIEPESSLPNIAELIADCNSEENSTSSKKGWVRGRGKGRGRIHSHLDRSYSLPVTAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLSSKPVF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19700127 19702303 + Tan0015267.2 Tan05g1392 752700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1392 305 SUPERFAMILY Winged helix DNA-binding domain 6 80 IPR036390 -
Tan05g1392 305 PRINTS Lupus La protein signature 6 23 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Tan05g1392 305 PRINTS Lupus La protein signature 85 101 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Tan05g1392 305 PRINTS Lupus La protein signature 32 47 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Tan05g1392 305 PRINTS Lupus La protein signature 63 76 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Tan05g1392 305 Pfam RNA recognition motif 93 164 IPR000504 GO:0003723(InterPro)
Tan05g1392 305 MobiDBLite consensus disorder prediction 269 305 - -
Tan05g1392 305 SMART la 4 77 IPR006630 -
Tan05g1392 305 SUPERFAMILY RNA-binding domain, RBD 77 184 IPR035979 GO:0003676(InterPro)
Tan05g1392 305 Gene3D - 4 82 IPR036388 -
Tan05g1392 305 PANTHER LUPUS LA PROTEIN-RELATED 6 296 IPR045180 GO:0003723(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005844(PANTHER)
Tan05g1392 305 ProSiteProfiles La-type HTH domain profile. 1 84 IPR006630 -
Tan05g1392 305 Pfam La domain 6 61 IPR006630 -
Tan05g1392 305 SMART rrm1_1 92 175 IPR000504 GO:0003723(InterPro)
Tan05g1392 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 181 IPR000504 GO:0003723(InterPro)
Tan05g1392 305 MobiDBLite consensus disorder prediction 228 252 - -
Tan05g1392 305 Gene3D - 83 184 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1392 K15191 - - csv:101217948 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1392 Tan-Chr5:19700127 Tan07g1132 Tan-Chr7:38722736 1.40E-34 dispersed
Tan05g1391 Tan-Chr5:19698895 Tan05g1392 Tan-Chr5:19700127 1.10E-164 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35