Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1443 ATGGCTACATTTTTATACGTATTTTCAATGCTAAGTCATCTCCTTCTTTTTCTCCATCTTCCTCTCTTCGTTGTCTCAATTTCTTTCAAAAAAGATTCATTTGAATCCATTGATAATGATATAGTTTATCAGGGAGATGTAGTTCTTTCTGATGGAAAGATTTTACTTACCAACCCTGATTTGTATTCTAATGTTGGTCGGGCCATTTACAAAGATACTGTGCCAATTTGGGACTCTAAAACAGGAAAAGTCACCGATTTCTCGACCCACTTCACCTTCACAATCGATACACAAGGTAGAACAAGATATGGCAGTGGGATTGCTTTTTTCTTTGCTCCACCTGGCTCTCAAATCCCAACAAACTCAGCTGGTGGATATTTGGGCGTTTACAACAAGACATTCACAAAACAAATTGTTCATGTTGAGTTTGATACTAGCATAAATAGTTGGGATCCTTCCTTTGAACATGTTGGCATAAACGTAAACTCGCTTATTTCTTCTAATTACACTCGTTTGAATGTTAGCTTACACAGTGGGGACATCGCCGATGTGTGGATCTCCTACAATTCAACAACCAAACACTTGATTGTGTCTTGGAAATACCAAGAGACATCGACTTCATTTGAAAATTCCACCCTCAGTTACCAGATTGATCTAATGACGATTCTTCCTCAATGGGCGACGGTGGGATTTTCAGCTGCAACTGGTACATATTTAGAGACACATACGCTATTTTCCTGGGAATTTAATTCTACCTTGGATATAAAGCAGACAAGTAAAAAAAAAATTGGAGACAAACTTCATATAATTGTAGGTGTAACGGTTCCAGTTGCAGTTTTCATTATTATGGTAATAATAGCATTACTTTGGAGGTTGAAGCAAAAGAAAAGGAGACCAGAGCAACATAATCCTGAGGAAGTAAATTTGACATCAATTAATGATTATTTGGACGGAGGGGCTGGACCGAGAAGGTTTTCTCACAAGCTTCTTGCCATGGCCACCAACAATTTCTCAAATGAAAGAAAGTTAGGTGAAGGTGGATTTGGTACGGTATACAGAGGATACATACCAGACATAAATTTGACAGTAGCTGTGAAGAAAATCTCAAGAGGTTCTAAACAAGGAAGGAAAGAGTATATAACTGAAGTGAAGATCATTAGTAGGCTTCGCCATCGCAATTTGGTACAACTCATTGGTTGGTGCCACGACAAAGGTGAGTTCTTGCTAGTTTATGAATTCATGCCCAATGGTAGCCTTGATTTTCATCTGTTTGGTAAGAGAAGCCCTCTTGCTTGGGGTGTGAGATATAAGATTGCTTTAGGATTAGCCTCTGCATTGCTATATCTTCATGAAGAATGGGAACAATGCGTGGTTCATAGAGACATAAAATCCAGTAACGTCATGTTAGATTCAAACTTCAATGTCAAACTTGGAGATTTTGGTCTGGCTCGATTAATGGACCACGACTTGAGTGCTCAAACGACTAAATTGGCAGGAACTTTGGGCTACTTAGCACCAGAATATATAAGTAGAGGCAGAGTTAGTAAAGAATCTGATATGTTTAGCTTTGGAGTTGTTGCTTTAGAGATTGCTACAGGAAGAATGTCAAGAACCCCAATGGAAAGGGAATCTCATAAAGGTTTGGTGGAGTGGGCTTGGGATCTTTATGGGAGTGAACAATTGCTTGTAGGCATAGATGAGAAATTGCAGTCCGATTATGACAAAAAACAAGTTGAATGTTTGATGCTTGTTGGACTGTGGAGTGCATATCCAGATCCTGATCTACGACCTTCGATAAAACAAGTAATTCAAGTTCTTAACTTTGAAATAATGATGCCAAATCTTCCAAGCAGAATGCCAGTTCCTATATATCTTGCCCCTTCCACATCAATGACCTCAAAGGAGCCTTCCTTTACCGTAAGTCTTGACATGGGTCGTTGA 1941 39.0 MATFLYVFSMLSHLLLFLHLPLFVVSISFKKDSFESIDNDIVYQGDVVLSDGKILLTNPDLYSNVGRAIYKDTVPIWDSKTGKVTDFSTHFTFTIDTQGRTRYGSGIAFFFAPPGSQIPTNSAGGYLGVYNKTFTKQIVHVEFDTSINSWDPSFEHVGINVNSLISSNYTRLNVSLHSGDIADVWISYNSTTKHLIVSWKYQETSTSFENSTLSYQIDLMTILPQWATVGFSAATGTYLETHTLFSWEFNSTLDIKQTSKKKIGDKLHIIVGVTVPVAVFIIMVIIALLWRLKQKKRRPEQHNPEEVNLTSINDYLDGGAGPRRFSHKLLAMATNNFSNERKLGEGGFGTVYRGYIPDINLTVAVKKISRGSKQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDFHLFGKRSPLAWGVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHDLSAQTTKLAGTLGYLAPEYISRGRVSKESDMFSFGVVALEIATGRMSRTPMERESHKGLVEWAWDLYGSEQLLVGIDEKLQSDYDKKQVECLMLVGLWSAYPDPDLRPSIKQVIQVLNFEIMMPNLPSRMPVPIYLAPSTSMTSKEPSFTVSLDMGR 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24249330 24251270 - Tan0014382.1 Tan05g1443 752751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1443 646 FunFam Lectin-domain containing receptor kinase A4.3 414 626 - -
Tan05g1443 646 Gene3D Transferase(Phosphotransferase) domain 1 414 627 - -
Tan05g1443 646 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Tan05g1443 646 FunFam L-type lectin-domain containing receptor kinase IX.1 322 413 - -
Tan05g1443 646 SUPERFAMILY Protein kinase-like (PK-like) 321 629 IPR011009 -
Tan05g1443 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g1443 646 ProSiteProfiles Protein kinase domain profile. 337 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1443 646 SMART serkin_6 337 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1443 646 CDD STKc_IRAK 343 607 - -
Tan05g1443 646 CDD lectin_legume_LecRK_Arcelin_ConA 27 253 IPR001220 GO:0030246(InterPro)
Tan05g1443 646 Pfam Protein kinase domain 338 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1443 646 Gene3D - 25 266 - -
Tan05g1443 646 Pfam Legume lectin domain 27 261 IPR001220 GO:0030246(InterPro)
Tan05g1443 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 253 IPR013320 -
Tan05g1443 646 ProSitePatterns Protein kinases ATP-binding region signature. 343 367 IPR017441 GO:0005524(InterPro)
Tan05g1443 646 PANTHER - 44 616 IPR050528 GO:0005886(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1443 Tan-Chr5:24249330 Tan05g1445 Tan-Chr5:24548145 8.20E-279 dispersed
Tan05g1442 Tan-Chr5:24222308 Tan05g1443 Tan-Chr5:24249330 1.60E-282 tandem
Tan05g1443 Tan-Chr5:24249330 Tan05g1444 Tan-Chr5:24370402 9.30E-73 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67612 PF00069 Pkinase 2.10E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1443 - - - 0.0