Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1483 ATGGTTGTTCTTGGATTATTTTTGGCTTGGAGGATTCGACATCCGAACACTGACGCCTACTGGCTATGGGCAATGTCAGTTGTTTGTGAAATATGGTTTGCTTTTTCCTGGCTTCTTGATCAATTGCCCAAGCTTTGCCCTGTAAATCGGGCCACAGATCTTAATGTACTGAAGGATAAGTTCGAAACACCTAGCCCTAGCAATCCTACTGGAAAATCTGATCTTCCAGGAATAGATATCTTTGTTTCTACTGCAGACCCAGAAAAAGAGCCCCCTCTTGTCACAGCAAACACAATCTTGTCGATTTTAGCTGCTGATTATCCTGTTGAAAAGCTTGCTTGCTATGTTTCAGATGATGGAGGTGCACTTCTAACCTTTGAGGCCATGGCAGAAGCTGCAAGTTTTGCTAACACATGGGTTCCTTTCTGTCGAAAACATGATATTGAACCTAGAAATCCTGAGTCTTACTTCAATTTGAAGAGAGATCCCTTCAAGAATAAAGTACGATCTGATTTTGTTAAGGATCGCAGACGTGTGAAACGTGAGTATGATGAGTTCAAGGTTCGGATAAATGGCCTTCCTGATTCTATTCGTCGTCGGTCCGATGCCTATCATGCAAGGGAGGAAATCAAAGCTATGAAGCGTCAGAGGCAAAATGTGGCTGGTGATGAACCAGTGGAGAGTGTAAAGATCCCTAAAGCAACATGGATGGCCGATGGAACTCATTGGCCTGGAACGTGGATGCAAGCTTCCGCCGAGCACTCCAAGGGTGACCACGCTGGTATAATACAGGTGATGCTTAAACCTCCAAGTGATGAACCACTACATGGAACTGCTGATGAAACAAAACTAATTGACCTATCTGAGGTTGACATCCGCCTTCCTCTTCTTGTTTATGTTTCTCGAGAAAAACGTCCAGGCTATGATCATAACAAGAAAGCAGGGGCAATGAATGCTCTAGTTCGAGCATCGGCTATTATGTCGAATGGGCCATTTATTCTCAACCTTGATTGTGACCATTATATCTACAACTCCCAGGCAATGAGAGAAGGAATGTGTTTCATGATGGACCGTGGAGGAGATCGTATTTGTTATGTCCAGTTCCCTCAAAGGTTTGAGGGCATTGATCCTTCGGATCGATATGCCAATCACAACACTGTGTTCTTTGATGTTAACATGCGAGCCCTTGATGGACTTCAAGGCCCAGTATATGTGGGAACAGGATGTCTCTTTAGAAGGATTGCCCTTTATGGTTTTGACCCACATAGATCAAAAGAGCGGCACCCTGGTTGCTGTAGTTGCTGCTTTGGTAAACGAAGAAAGCATACATCGATTGCAAATAGTCCTGAAGAGCATCGAGGCCTAAGAATGGGCGACTCTGATGATGAAGAGATGGACCTATCCTTGTTCCCAAAAAGGTTCGGAAATTCTACTTTTCTAGTTGATTCAATTCCAGTTGCAGAGTTTCAAGGACGCCCATTAGCTGATCACCCAGCTGTGAAATATGGACGCCCTCCTGGTGCTCTTACCATTCCTCGTGAGCTTCTTGATGCATCAACTGTTGCAGAGGCAATCAGTGTCATTTCTTGTTGGTATGAAGATAAGACTGAATGGGGCCAACGGGTTGGGTGGATTTATGGATCTGTCACAGAAGATGTGGTTACTGGGTACAGGATGCATAATAGGGGATGGAAATCCATTTATTGTGTAACCAAACGTGATGCTTTTCGTGGAACTGCACCTATCAATCTCACTGATAGGCTCCATCAAGTCCTTAGATGGGCTACTGGGTCAGTCGAGATTTTCTTCTCCAGAAATAATGCACTGTTGGCTAGTCCAAGAATGAAGATCTTGCAAAGAATAGCCTATCTAAACGTTGGAATCTACCCGTTCACTTCCATCTTCCTCATAGTTTACTGTTTTCTCCCTGCACTTTCTTTATTTTCGGGGCAATTTATTGTTCAGACTCTCAATGTCACTTTCCTCACTTACCTTTTAGTCATCACCATCACTCTATGCCTGCTTGCTGTTCTTGAAATCAGATGGTCTGGCATTGAATTAGAAGAATGGTGGAGAAATGAACAGTTTTGGTTGATTGGAGGCACTAGTGCCCATCTTGCTGCTGTGCTTCAGGGTTTGCTAAAAGTCATAGCTGGGATTGAAATTTCTTTCACCTTGACATCCAAATCAGCTGGTGACGATGTGGACGATGAATTTGCCGATCTCTACATCGTGAAGTGGACGTCTCTCATGATTCCACCCATCACAATCATGATGGTCAACCTAATCGCCATCGCGGTTGGGGTCAGCCGCACAATCTACAGTACAATTCCACAGTGGAGTCGTTTGATTGGTGGTGTTTTCTTCAGTTTTTGGGTTCTTGCTCATCTATACCCCTTCGCCAAGGGGCTCATGGGAAGAAGAGGAAGGACGCCAACCATTGTTTTCGTGTGGTCCGGACTGCTTGCCATCACCATATCTCTTCTTTGGGTGGCCATTAGTCCCCCAAGTGGTGCAAATGAAATAGGAGGTTCATTCTCTTTCCCTTGA 2550 44.51 MVVLGLFLAWRIRHPNTDAYWLWAMSVVCEIWFAFSWLLDQLPKLCPVNRATDLNVLKDKFETPSPSNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANTWVPFCRKHDIEPRNPESYFNLKRDPFKNKVRSDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYHAREEIKAMKRQRQNVAGDEPVESVKIPKATWMADGTHWPGTWMQASAEHSKGDHAGIIQVMLKPPSDEPLHGTADETKLIDLSEVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPHRSKERHPGCCSCCFGKRRKHTSIANSPEEHRGLRMGDSDDEEMDLSLFPKRFGNSTFLVDSIPVAEFQGRPLADHPAVKYGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLVITITLCLLAVLEIRWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAISPPSGANEIGGSFSFP 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27728534 27734658 - Tan0008482.3 Tan05g1483 752791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1483 849 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 280 422 IPR029044 -
Tan05g1483 849 Pfam Cellulose synthase 78 838 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Tan05g1483 849 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 821 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)
Tan05g1483 849 FunFam cellulose synthase-like protein D3 284 421 - -
Tan05g1483 849 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 643 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1483 Tan-Chr5:27728534 Tan05g1485 Tan-Chr5:27777845 0.00E+00 dispersed
Tan05g1482 Tan-Chr5:27728534 Tan05g1483 Tan-Chr5:27728534 0.00E+00 tandem
Tan05g1483 Tan-Chr5:27728534 Tan05g1484 Tan-Chr5:27777845 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1483 K20924 - csv:101221949 1709.89