Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1555 ATGGCGACTAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAACTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTTTACAGTGCCTTCGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAACATCCATTGATGGCACTCGCATTATTGGCCGCCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCACTTGAGAAACAGCCTACCTGATCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTCTGGGGAATACAATTGCTTGTAATGATCATGTTGCTCTCACACATTCTGATCTTGACCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGACAGACGGTTGCTGGTAACGTTCTCGTGGGAAGCTACTGTAGCTTCACAAATAGGGGTGGCTTGGTTCATCCACATACGTCTATTGAAGATTTGGACGAACTATCGACTCTTCTTCAGGTCCCGTTAGTTGCTGGAACTGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACAACTGCCACTGAATTATCAGTTATTGAGAGCGTTTTCAAATTGAGAGAGGCTCAACCAAGTTCCATTGTCGACGAGATGAGGAAGTCGCTAATAGACAGTTACGTGTGA 738 44.17 MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFETELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHSDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34029850 34033296 + Tan0013360.1 Tan05g1555 752863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1555 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Tan05g1555 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Tan05g1555 245 CDD IF6 2 223 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Tan05g1555 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Tan05g1555 245 SUPERFAMILY Pentein 1 224 - -
Tan05g1555 245 Gene3D - 1 225 - -
Tan05g1555 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Tan05g1555 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Tan05g1555 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER)
Tan05g1555 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0036 Tan-Chr5:466648 Tan05g1555 Tan-Chr5:34029850 2.60E-137 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1555 K03264 - csv:101207707 458.759