Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1563 ATGGCCATGGCGGTGGAGCTTTACACCAACGCCCAACTCTCCGTCCCAATGGACCAAGATTCCGCCGTCCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCATCGCATTACTCTCTCACTCTCCCCCTTCTAACCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCAAGAAGGCAATTTCTCTCCTCGGCCGCTCCCCCCGAACTGGCCACGCCCGATTCCGCCGTGCCCCCTTGGATTCCTCTAAAATTTACAACGCCACCCCCATTCAACAAATTCCTCCTCCCCTTGACCGCCTCGAATCCGCCACCACCATTAATTTCTCTTATTCCTCTGCGCCTACCGCCTCTTTCTTGACCTCCCATGCCGCTGCCGACTCTGAAATTAAGTTCCAACACCAACCCTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGCTCTCAAGAGGAAGTGTGGCTCTGACAATTTGGGCTCTGGGAAGTGCGGTGGATCCTCTGGTGGTCGATGCCACTGCTCCAAGAAGAGAAAAATGAGGATGAAAAGGGTGGTGAGAGTTCCAGCTATAAGCTCAAAGAACGCTGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTACAAGTGTAGCAGTTTAAGAGGATGCCCGGCTAGAAAACACGTTGAGAGAGCCTCAGATGATCCATCTATGTTAATAGTGACATATGAAGGCGACCATAATCACTCTCAATCAGTTGCAGAGGCCTCGAGTCTCATCCTCGAATCTTGGTGA 867 51.21 MAMAVELYTNAQLSVPMDQDSAVQEAASGLDTLKKLIALLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPLDRLESATTINFSYSSAPTASFLTSHAAADSEIKFQHQPSSSSFQITDLSRVSSVVSKPSSALKRKCGSDNLGSGKCGGSSGGRCHCSKKRKMRMKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34512686 34514925 - Tan0021599.1 Tan05g1563 752871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1563 288 SMART WRKY_cls 215 275 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1563 288 FunFam WRKY transcription factor 65 199 276 - -
Tan05g1563 288 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1563 288 Pfam Plant zinc cluster domain 167 213 IPR018872 -
Tan05g1563 288 SUPERFAMILY WRKY DNA-binding domain 211 275 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1563 288 Gene3D WRKY domain 188 276 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1563 288 ProSiteProfiles WRKY domain profile. 210 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1563 288 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 278 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1563 Tan-Chr5:34512686 Tan09g1752 Tan-Chr9:69067801 1.10E-52 dispersed
Tan05g1563 Tan-Chr5:34512686 Tan05g1564 Tan-Chr5:34512686 1.30E-127 tandem
Tan01g4742 Tan-Chr1:113264247 Tan05g1563 Tan-Chr5:34512686 2.00E-62 wgd
Tan03g1585 Tan-Chr3:72085689 Tan05g1563 Tan-Chr5:34512686 2.20E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27508 PF03106 WRKY 2.50E-26 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1563 - - - 0.0