Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1563 | ATGGCCATGGCGGTGGAGCTTTACACCAACGCCCAACTCTCCGTCCCAATGGACCAAGATTCCGCCGTCCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCATCGCATTACTCTCTCACTCTCCCCCTTCTAACCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCAAGAAGGCAATTTCTCTCCTCGGCCGCTCCCCCCGAACTGGCCACGCCCGATTCCGCCGTGCCCCCTTGGATTCCTCTAAAATTTACAACGCCACCCCCATTCAACAAATTCCTCCTCCCCTTGACCGCCTCGAATCCGCCACCACCATTAATTTCTCTTATTCCTCTGCGCCTACCGCCTCTTTCTTGACCTCCCATGCCGCTGCCGACTCTGAAATTAAGTTCCAACACCAACCCTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGCTCTCAAGAGGAAGTGTGGCTCTGACAATTTGGGCTCTGGGAAGTGCGGTGGATCCTCTGGTGGTCGATGCCACTGCTCCAAGAAGAGAAAAATGAGGATGAAAAGGGTGGTGAGAGTTCCAGCTATAAGCTCAAAGAACGCTGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTACAAGTGTAGCAGTTTAAGAGGATGCCCGGCTAGAAAACACGTTGAGAGAGCCTCAGATGATCCATCTATGTTAATAGTGACATATGAAGGCGACCATAATCACTCTCAATCAGTTGCAGAGGCCTCGAGTCTCATCCTCGAATCTTGGTGA | 867 | 51.21 | MAMAVELYTNAQLSVPMDQDSAVQEAASGLDTLKKLIALLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPLDRLESATTINFSYSSAPTASFLTSHAAADSEIKFQHQPSSSSFQITDLSRVSSVVSKPSSALKRKCGSDNLGSGKCGGSSGGRCHCSKKRKMRMKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34512686 | 34514925 | - | Tan0021599.1 | Tan05g1563 | 752871 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1563 | 288 | SMART | WRKY_cls | 215 | 275 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g1563 | 288 | FunFam | WRKY transcription factor 65 | 199 | 276 | - | - | |
Tan05g1563 | 288 | Pfam | WRKY DNA -binding domain | 217 | 273 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g1563 | 288 | Pfam | Plant zinc cluster domain | 167 | 213 | IPR018872 | - | |
Tan05g1563 | 288 | SUPERFAMILY | WRKY DNA-binding domain | 211 | 275 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g1563 | 288 | Gene3D | WRKY domain | 188 | 276 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g1563 | 288 | ProSiteProfiles | WRKY domain profile. | 210 | 276 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g1563 | 288 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 23 | 278 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1563 | Tan-Chr5:34512686 | Tan09g1752 | Tan-Chr9:69067801 | 1.10E-52 | dispersed | |
Tan05g1563 | Tan-Chr5:34512686 | Tan05g1564 | Tan-Chr5:34512686 | 1.30E-127 | tandem | |
Tan01g4742 | Tan-Chr1:113264247 | Tan05g1563 | Tan-Chr5:34512686 | 2.00E-62 | wgd | |
Tan03g1585 | Tan-Chr3:72085689 | Tan05g1563 | Tan-Chr5:34512686 | 2.20E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27508 | PF03106 | WRKY | 2.50E-26 | CL0274 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1563 | - | - | - | 0.0 |