Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1572 ATGGGAACTCTCTCCTTCCCGTTTGCATATTCTAAATCCCGACTGTTACCAACTCGGAACCGAATTGCATTTTCAAACCCTTTTCTTATTCAACCATCTTTCCCTTCTGTATTTCGCGTTCGTAATTTTCCCAATCTCCACCTACGGCGGCTTGTTCTCTGCGCCGCTGCGGCAACTGATAATTCGAATCACGATCACCACCACCATGTTCATGATCATCACCACCACCATCACCATGGTCACCACCATTGGGATCATGATGTGGAGCTGACTGGGCCTCAGAGAGCGGTGATTGGATTCGCTAAAGCCATTAGGTGGACGGACTTGGCGAATTATCTGAGAGAACATTTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTTGCTGCTGCTGTTTGCCCTCATTTGGTTCCGAAGCCCATTGTGAAGCCTTTGCAAAATGCTTTCATTGTCATTGCTTTTCCTTTAGTCGGGGTCTCTTCATCCCTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATCCATGTACTTATGGCTCTTGCAGCCTTTGCATCAATCTTTATGGGGAACGCCTTGGAAGGAGGACTACTGCTTGCCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTACAAGTCGTGCAATGATTGATGTCAAAGAGTTGAAGGAAAACTATCCCGATTCGGCCCTTGTTTTAGATACAAATGATGATAAACTTCCAAATGTTACAGATTTGTCCTATCAGAAGGTGGCTGTCCACGATGTACAAGTGGATTCCTATATATTGGTTGGAGCTGGTGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACTATTGAGCACCTAACTGGTGAAATCAAACCTTTAGAGATTACGGTTGGAGACAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTTAAGGCCACCAAGACCTGGAAAGAGTCAACTCTTAGTCGGATAGTGAACTTGACTGAAGAGGCACAACTGAATAAACCAAGACTTCAAAGGTGGCTGGATGAATTTGGCGAGCATTATAGCAAAGCAGTTGTAGTTTTGTCCATTGCTATTGCCCTTGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCCGTTGCACCACTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCTTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGGGGCCTTATTTTCAAAGCAATTGAACCAATTTACGGACATAAGGTCAGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACTCACCCAATTGGAAGAGCTGTGGTTGACCATAGTATGGGAAAAGACCTCCCTTCCTTTTCTGTCAAAAATTTGGAATATTTTCCGGGTAGAGGACTTGTTGCAACTCTGCATGGTATTGAGTCAGGAACTGAAGGGGGGAAACTATTGAAAGCATCTCTTGGTTCCTTGGATTTCATCACTTCACTCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCAAGCACATCTTTGTATGGAAGTGAATTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCAGCCTCATCCTGGAGTTTCGAGTGTAATTGCAGAACTAACAGATATAGCGAAACTCCATGTTATGATGTTGACTGGAGATCATGAGTCAAGTGCAAGGAGAGTGGCGAAAGCAGTGGGCATCAAGGAAGTCCACTTCAGTCTAAAGCCTGAAGACAAGCTTAGTCACGTGAAAAGTATCTCTAGGGAGAATGGAGGAGGGCTAATCATGGTTGGTGAAGGCATTAATGATGCACCAGCTCTTGCTGCTGCTACTGTAGGAATAGTGCTCGCTCAACGTGCTAGTGCAACTGCTATAGCTGTGGCAGATGTTCTGTTGCTGCGGGAGAACATTTCTGGTGTACCATTTTGTATCGCCAAGTCGCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCCTTACTTTCAATATTTATAGCCTCCCTTCCCGCAGTTTTAGGGTTTCTTCCCTTGTGGTTGACGGTACTTCTGCATGAAGGTGGTACACTTCTCGTTTGCCTCAATTCCATACGCGCTCTGAATAATCCCTATTGGTCCTGGAGGCAGGACTTGAGTCAATTGCTAATGAAGCTCAAATTTTGGGGCTTGCAGCGAAGCCTTAATACCAGCTCTACCACTCTACGATCTTCTTCCCCTGTATAG 2451 44.39 MGTLSFPFAYSKSRLLPTRNRIAFSNPFLIQPSFPSVFRVRNFPNLHLRRLVLCAAAATDNSNHDHHHHVHDHHHHHHHGHHHWDHDVELTGPQRAVIGFAKAIRWTDLANYLREHLQLCCCSMALFVAAAVCPHLVPKPIVKPLQNAFIVIAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKELKENYPDSALVLDTNDDKLPNVTDLSYQKVAVHDVQVDSYILVGAGESVPVDCEVFQGSATVTIEHLTGEIKPLEITVGDRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLSIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGLVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHKVRENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVKNLEYFPGRGLVATLHGIESGTEGGKLLKASLGSLDFITSLYKSETKSKEIKEAASTSLYGSEFVHAALAVDGKVTLIHLEDQPHPGVSSVIAELTDIAKLHVMMLTGDHESSARRVAKAVGIKEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRENISGVPFCIAKSRQTTALVKQNASLALLSIFIASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPYWSWRQDLSQLLMKLKFWGLQRSLNTSSTTLRSSSPV 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36337512 36390938 - Tan0013550.1 Tan05g1572 752880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1572 816 SFLD C1.7: P-type atpase like 424 725 - -
Tan05g1572 816 SUPERFAMILY Calcium ATPase, transduction domain A 247 335 IPR008250 -
Tan05g1572 816 ProSitePatterns E1-E2 ATPases phosphorylation site. 444 450 IPR018303 -
Tan05g1572 816 Gene3D - 453 603 IPR023299 GO:0000166(InterPro)
Tan05g1572 816 SUPERFAMILY HAD-like 440 772 IPR036412 -
Tan05g1572 816 SUPERFAMILY Calcium ATPase, transmembrane domain M 178 752 IPR023298 -
Tan05g1572 816 Gene3D - 435 723 IPR023214 -
Tan05g1572 816 Pfam E1-E2 ATPase 246 422 - -
Tan05g1572 816 SFLD p-type atpase 424 725 IPR044492 -
Tan05g1572 816 Pfam haloacid dehalogenase-like hydrolase 440 685 - -
Tan05g1572 816 Gene3D - 214 340 - -
Tan05g1572 816 MobiDBLite consensus disorder prediction 64 85 - -
Tan05g1572 816 PRINTS P-type cation-transporting ATPase superfamily signature 696 708 - -
Tan05g1572 816 PRINTS P-type cation-transporting ATPase superfamily signature 442 456 - -
Tan05g1572 816 PRINTS P-type cation-transporting ATPase superfamily signature 672 691 - -
Tan05g1572 816 PRINTS P-type cation-transporting ATPase superfamily signature 618 628 - -
Tan05g1572 816 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 55 799 IPR051949 -
Tan05g1572 816 NCBIfam heavy metal translocating P-type ATPase 176 774 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Tan05g1572 816 CDD P-type_ATPase_HM 120 774 - -
Tan05g1572 816 MobiDBLite consensus disorder prediction 68 82 - -
Tan05g1572 816 NCBIfam HAD-IC family P-type ATPase 244 464 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan05g1572 816 NCBIfam HAD-IC family P-type ATPase 588 752 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1514 Tan-Chr5:29768884 Tan05g1572 Tan-Chr5:36337512 0.00E+00 dispersed
Tan05g1572 Tan-Chr5:36337512 Tan09g1716 Tan-Chr9:68720537 3.30E-51 dispersed
Tan05g1572 Tan-Chr5:36337512 Tan05g1573 Tan-Chr5:36338230 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1572 K01534 - mdm:103453726 1139.41