Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1588 ATGCATCCCGACGATCACCACCAGCAGCCGTTGTTAGAGGAGGAAGATGAAGAAACTGCTTACGACTTAACGGAGAAGGTTGTGGTAATTGGAATCGACGAAGCGGAGGCCGATTCCGACGTGGGTGTGCCGCCGTTTTCATGGAAGAAGCTCTGGCTGTTCACAGGGCCTGGGTTTTTGATGAGCATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCAGGTGCGATTGCTGGGTATTCTTTGTTGTGGCTTCTGTTTTGGGCTACGGCCATGGGGCTTTTGATCCAGTTGCTTTCGGCTAGACTTGGCGTTGCCACAGGCAGGCACTTGGCCGAGCTGTGTAGAGAAGAGTACCCAACTTGGGCGAGAATTGTGCTGTGGGTTATGGCCGAATTGGCCCTCATTGGGGCTGATATACAGGAAGTTATTGGGAGTGCTATTGCTATTAAGATTCTAAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTCATCATCACTGCTTTAGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGCGTGAGGAAGTTGGAGGCTGTTTTTGCTGTTCTTATTGCTACTATGGCACTCTCGTTTGCTTGGATGTTTGGTGATACTAAGCCAAATGGGAAAGAGCTTTTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGTTGTATCATTATGCCTCATAATGTGTTTCTGCACTCTGCTCTTGTGCAGTCGCGGGACGTCGATCCAAGCAAGAAAGGGAGGGTCCGAGAAGCTCTCAGATACTATTCCATTGAGTCCACACTTGCCCTTCTTGTCTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACAGACATAGCAAATAGCATCGGTCTCGTAAATGCAGGCGAATATCTTCAAGATAAATATGGTGGAGGGGTTTTTCCAATTTTGTATATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATTACTGGTACCTATGCAGGGCAGTTTATAATGGGAGGCTTCCTGAACTTAAAGTTGAAAAAATGGCTTAGAGCTTTGATAACTCGAAGCTTTGCAATCGTACCGACTATGATTGTAGCCCTTTTGTTCGAAACTTCCGACGGGATGGTCGATGTTCTCAATGAATGGCTCAATGTTCTCCAGTCAATTCAGATCCCCTTTGCTCTGATTCCTCTTCTTTGTTTGGCTTCTAAGGAACATCTAATGGGCAATTTCAGAATAGGCCCCGTTTTAAAGATGTTCTCTTGGCTGGTGGCAGTCTTGGTGATGGCCATCAATGGGTATCTTTTAGTGAGCTTCTTCTCATCGGAAGTGAATGGAGTGCTCGTTGCCATTTTCGTGTTCATCTTCATCGCTGCATATCTTTCCTTTGTTGTTTACCTCGTCTATCGAAGCATTTCGTTTTCAAGTTGGCACAACTTCATTAACCGGAAGACATCTGCGGCCGCCGAAAACTGA 1533 45.6 MHPDDHHQQPLLEEEDEETAYDLTEKVVVIGIDEAEADSDVGVPPFSWKKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLFWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTKPNGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPSKKGRVREALRYYSIESTLALLVSFIINLFVTTVFAKAFYGTDIANSIGLVNAGEYLQDKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALLFETSDGMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGNFRIGPVLKMFSWLVAVLVMAINGYLLVSFFSSEVNGVLVAIFVFIFIAAYLSFVVYLVYRSISFSSWHNFINRKTSAAAEN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38223023 38226446 + Tan0019930.1 Tan05g1588 752896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1588 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 493 IPR001046 GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER)
Tan05g1588 510 NCBIfam Nramp family divalent metal transporter 56 425 - -
Tan05g1588 510 Pfam Natural resistance-associated macrophage protein-like 72 433 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan05g1588 510 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1588 Tan-Chr5:38223023 Tan11g1251 Tan-Chr11:10668825 2.30E-87 dispersed
Tan05g1588 Tan-Chr5:38223023 Tan05g1589 Tan-Chr5:38223023 2.30E-284 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1588 K21398 - csv:101211711 944.495