Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1595 ATGTCAATCACTAATAAATGCGGCGGTGCAATGGGGGTATCATTGCTTAAAGTGCTTCTTAGACACATTTCATCATTTCTCCAACTTTCATCTTCTGACTACATAAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTCAAACTATTGAGGCCAATACTAGATGCAGTTGTTGATTCAGATATAGCTTCCGATGAAGAGCTTACTAAGGCATTTGAAGAACTTGATCATTCAGTGGATGAACTAAGGGTGCTCTTTGAAAATTGGCAACCATTGTCGAGTAAAGTATACTTCGTACTGCAAAGTGAAGCATTAATAACAAAGATTGGAAAATCTAGCTTGGATATATTCCAACTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTAAGTTCGACCTCTCTTGAGCACTGCGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAACATCCTCTGTTATTAGAGATGCGATAAGGAATCAAATAGAGGGCATTTCGCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTGAGCTTGAGATCAAATCAGGAAATTTTAATTGAGGCTGTCGCCCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAACGACTTGTTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGACAGACCTATGAGCGGGTTTTCATAAAAAATTGGATTGATCTGGGGCTCAATGTTTGCCCAAAGACTAGACAGACTTTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAATTGTCTGATCCCTCAAGGTCAGTGAACTTAAACCAGCTTTCACCTCTTCTTGTCGGGAGCTTTGAGTCTGATACCCATCGAGAATCCTTTTTTCCTCATTCCCCTGGCTACCAACCGATGTCCCCTCAGTCAACCAGGTCTGCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCATTCTTTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGACTATTGCTTACAAGTTCAGAAGATCGAACGGCCAAATTGGAAGAAAATGGTTGTGATTTGGTTGCTAAACCATCAATGTCACCATCTAGAACCAATGTTTCAAATACCAGTGAGGATGAACCGTCACATAGTCATAATAGGACGGCTTCCACCTCTAGTCCAGTCTCAAATGCTAATCTCTCTCGAGGAACATTAGGGGAAGCCAATGAAGCTTCAAATGTGTCAACCAATATGACAGGTTATGGCAGTGATGCTGCTAGGGATAGTAAATCAGACCCCTTGGCTGCTGCTACTTCGACTCCCAACCACAGAGAACCAGAGCTTCCACCCAGACTAGCAGACTCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAATTACATCATCTGCTAATGAGACGAGGCCGGATCTTTCTGCCATTGAAGCACAAGTTCAGAAGGTGGTTGAGGAATTGAAGAGCAGTTCACTTGAAACTTTAAGAGGTGCCACAGCTGAATTGCGGCTACTGGCCAAACATAATATGGATAATCGTATAGTAATTGCTCAATGTGGGGCCATTGAGTATTTGGTTGATTTGCTCCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACTGCACTTCTTAACTTATCCATCAATGATAATAACAAAAGTGCCATTGCCCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAGCTGGGAGCCCAGAGGCAAAGGAGAATTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTTTGGTTGAATTGTTGGGTAATGGAACTCCTAGAGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCAATATTTCATGAGAACAAGGCTAGAATTGTGCAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCCGAGGGTAGGTCTGCAATTGGTCAGGAAGGTGGAATTCCTGTTCTCGTTGAGGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCTCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCGGGGAGAGGGTAA 2520 43.17 MSITNKCGGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVFKLLRPILDAVVDSDIASDEELTKAFEELDHSVDELRVLFENWQPLSSKVYFVLQSEALITKIGKSSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEETSSVIRDAIRNQIEGISPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMVALVTRMHERLVMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVNLNQLSPLLVGSFESDTHRESFFPHSPGYQPMSPQSTRSALGGTHRDGSSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSSEDRTAKLEENGCDLVAKPSMSPSRTNVSNTSEDEPSHSHNRTASTSSPVSNANLSRGTLGEANEASNVSTNMTGYGSDAARDSKSDPLAAATSTPNHREPELPPRLADSRSRGNTMWLRPSERFATRIITSSANETRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKAGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38591852 38598057 + Tan0004104.1 Tan05g1595 752903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1595 839 FunFam RING-type E3 ubiquitin transferase 539 834 - -
Tan05g1595 839 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 SMART arm_5 748 788 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 SMART arm_5 626 666 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 SMART arm_5 708 747 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 SMART arm_5 790 830 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 SMART arm_5 585 625 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 SMART arm_5 667 707 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 Gene3D - 534 835 IPR011989 -
Tan05g1595 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 PANTHER U BOX DOMAIN-CONTAINING 39 832 - -
Tan05g1595 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 MobiDBLite consensus disorder prediction 355 388 - -
Tan05g1595 839 SMART Ubox_2 249 312 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g1595 839 MobiDBLite consensus disorder prediction 428 442 - -
Tan05g1595 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 719 760 IPR000225 GO:0005515(InterPro)
Tan05g1595 839 Pfam U-box domain 246 316 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g1595 839 SUPERFAMILY ARM repeat 555 828 IPR016024 -
Tan05g1595 839 MobiDBLite consensus disorder prediction 347 395 - -
Tan05g1595 839 Coils Coil 189 219 - -
Tan05g1595 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Tan05g1595 839 CDD RING-Ubox_PUB 247 299 IPR045210 -
Tan05g1595 839 FunFam RING-type E3 ubiquitin transferase 245 320 - -
Tan05g1595 839 MobiDBLite consensus disorder prediction 417 526 - -
Tan05g1595 839 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g1595 839 MobiDBLite consensus disorder prediction 449 487 - -
Tan05g1595 839 SUPERFAMILY RING/U-box 234 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1619 Tan-Chr3:72366849 Tan05g1595 Tan-Chr5:38591852 1.80E-39 dispersed
Tan03g1620 Tan-Chr3:72366849 Tan05g1595 Tan-Chr5:38591852 1.80E-39 dispersed
Tan03g1621 Tan-Chr3:72372414 Tan05g1595 Tan-Chr5:38591852 1.00E-32 dispersed
Tan05g1595 Tan-Chr5:38591852 Tan06g1105 Tan-Chr6:10859956 5.40E-89 dispersed
Tan03g1608 Tan-Chr3:72366849 Tan05g1595 Tan-Chr5:38591852 1.70E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1595 - - - 0.0