Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1616 ATGGCGGACGAGCAGCCTTCAGCCGCTAATCGCCGGAGGAGCCGAGGATCTGAGGCATCTGCCCGCCTTCAGGCTTTGGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCGGAAGCCGGTGGTGTCCAAGTTAAGTTGGAGAACCCTATCTACGATACCATTCCCGAGGATGAGTATGATGCTCTCGTTGCAAAGCGTCGCGAAGAAGCCCGAGGGTTTATTATTGACGACGACGGTCTTGGATATGGAGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGGGTTTGTTCCTCCGATGAGTCTGACGGCGAGCCTGAGAAACCTAAGAAGAGGAAAGCAGAGAAGAAAGAACCGCAACCGAAGAAACCCTCTTCTTCTTCTCTATCGGCGGCGGCGGCCATGATGGGGAAACAGAAGCTTTCTTCGATGTTCACTTCATCGATCTTCAAGAAAACGGGTAGAGATGATAAGGCTAAAGGGTTGGCTTGTGACAGTATTGTCGATGATGTGATTGCCGAATTTGCGCCGGATGAGACTGATAGAGAGCGGCGTAGAAAGGGGCAAATCGGAGCTACACAGATTTCGAGAACATTTGCGCCTGTTTCTGCTGTGAAATGCGAGGTATTAACTGCTCAAAGTTTTAATTTGACTGGTGGATCTGAATTGGTTAAGGGCACTGAAAATGGGAACAATGGAGTGGCCAGGGTTCTCACAAACAGTGATTTAGAGCTTGTGCGAGCTGGTATAGAGGTCGAGGGAAATGGTGAAACTAAAGAATTTGACGCAAAGGAGGATTTAGATTCTGAAATCAATCTGGATTCGGTTGGGCAATCGCATAATCTTTCGACCAAGGAAAATGTAATTGAAGATAATATGTCAATTGTGGTAGAAACGAAGGCAGAGCCGTTAGTGAAGAAGGAGCCGGCTTGTGCCTTGAATGCTAAGATTAGCGATGTGAAGGACCCCGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTGCGGAGTGAAGGGAGTGGAAATGTTGATTCTGCTGCTGCAGATATTTCTGAAGAGAAATCTCATTTTGATATTGACGCTGATGGCTCTCTGCCTTTCTATATAGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTGTTTGGCAAGGTCAAAGCAGGAGATACATACCACAGTTGTTGTGTGGTGGTGCAAAACATGCAAAGATGCATATATGCTATTCCAAGTGCCTCTTTTCTTCATTCGGATGAGATGTTGAAGCTTCAGAACGATGCTGAACAGTCTCAGCTTTCTCCTACAGATCTGCGTACCAAGTTGCAAGAAGTGACTGCAGGATTAAAAACTGAAATAGCTAAGCAGTTGCTAGATCTCAATGTTTCAACATTCAGCATGACACCTGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCAGGGGAAAATTATGTGCTAAAGATTAATTACTCATTCAAGCACCCCCCACTTCCTGCTGATCTAAAAGGAGAATCATTCTGTGCTCTCTTAGGAACGCATCGCAGTGCATTGGAGCTTCTTCTCATTAAAAGGAAAATAAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCCCGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCTCCAAAAGATGTTCAGATTTCAACTTCATCAAGCAAAACTCTGGAGATTCCTTCTATGATTGTCACTGCAATAAACATGAAGACCATTATTAATGAAAGGCAGAATGTCAACGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTAGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCAATGGGATTTGCTAAAGAGTCCACAGATAGAAATTCGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGCAATGAAAGGGCCTTGTTGAATCGATTAATGATTGAATTATTCAAATTGGATAGTGATGTGTTGGTTGGGCACAATATCTCTGGGTTTGATCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCTAGTCCAGGAGTCATGTCTTGCATTGCTGGTCGGCTCTTATGTGATACATACTTGTCTTCCCGTGACCTATTGAAAGAGATAAGTTATTCTTTGACAGAGCTAGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCACATGACATTCCAAGAATGTACCAAGCATCAGAGTCTCTCATGAACCTGGTTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGTCAGTTGACTAATATCAGTGGTAACCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCACGCCAAGAAGTATATTGTCCCCGACAAGATTTCATCTTATGTGAAGGAAAAAAAAATGGTTAAAAAGAGAACGAATCATGGTTCTGAGGAAAAAAATGTTGTTGAATTTAATTTAGATGATGCAAATGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATTTTGCTCCTGGACTTCAACAGTCTGTACCCATCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCGTTTGCCATCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGCGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGCTCCAGCAACTTGACATTCAGCAGCAGGCATTAAAGCTCACTGCAAACAGTATGTATGGATGCCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTGCAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACTGATTCAATAATGATTCATAGTGGACTGGATGATGTTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAATACAAGTGTTTAGAAATTGATCTTGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAGGATGGAACGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGGTCATGTGAGGATGTCATTGAATCAATACATGACTCTCTTACGAAGATCCAAGAGGATATGAGGAAAGGGCAAGTTGCACTCGAGAAATATATCATCACGAAGACATTGACCAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTGCAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTAAAAAAAGAAGACGGAAAATGGATGATTGACATCGATTACTACCTGTCACAGCAGATTCACCCTGTAGTTTCTCGCCTCTGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTCCAAATCAAATCAAGTGAAGTTTCCCGAAGTGATGTCTCCTCTTCCCTCTTGTGTTCCGTAAATGATGGGGAAAGGTATCAGGGCTGTATACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTGAGTGTCCTGCTATCTTCAGTTCCATTTACAAATCTACAGATGGAAAGCAAGAAAGGCCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGCGTTGTCTGAAATGTCCTGACGAAGCTAGTGCGGGTAGAATTACTCCTGGAATAATTGCCAACCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCAATGTATTATAATGGCGTACTGATGTGTGAGGATGAAACCTGCAAACATGTCACACGTGCTGTCAATCTTCGACTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCAAACTATCCCCAATGCAATGGGCGTCTAATAAGAAAGTACACAGAAGCGGATTTGTACAAGCAGCTTGCATATTTTAGTCACATTTTGGATACCGTACGCTGTATGGAAAAGTTGGAGGTTCACGCAAGGGTAACTTTAGAGAAAGAAATGGCAAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGTCTTCGAGATCGCAGTGCATATGGTTGGGTGCAGCTGCAGGATTTTGTAGTTACAGTTTGA 4650 43.46 MADEQPSAANRRRSRGSEASARLQALERLKAIRSGGRRSEAGGVQVKLENPIYDTIPEDEYDALVAKRREEARGFIIDDDGLGYGDEGEEEDWSKAGVCSSDESDGEPEKPKKRKAEKKEPQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFKKTGRDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGQIGATQISRTFAPVSAVKCEVLTAQSFNLTGGSELVKGTENGNNGVARVLTNSDLELVRAGIEVEGNGETKEFDAKEDLDSEINLDSVGQSHNLSTKENVIEDNMSIVVETKAEPLVKKEPACALNAKISDVKDPALSATAGWQAVRSEGSGNVDSAAADISEEKSHFDIDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTYHSCCVVVQNMQRCIYAIPSASFLHSDEMLKLQNDAEQSQLSPTDLRTKLQEVTAGLKTEIAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYVLKINYSFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSRPGSQRVSWCKFEVIVDSPKDVQISTSSSKTLEIPSMIVTAINMKTIINERQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESTDRNSKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHDIPRMYQASESLMNLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISSYVKEKKMVKKRTNHGSEEKNVVEFNLDDANVEAPNTESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGVVPRLPSSKVTGVLPELLKNLVQRRRMAKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVIESIHDSLTKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSAGIAQRARHPDELKKEDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIKSSEVSRSDVSSSLLCSVNDGERYQGCIPLTLTCPSCSGTFECPAIFSSIYKSTDGKQERPVDEPTSKFWNNLRCLKCPDEASAGRITPGIIANQVKRQAERFISMYYNGVLMCEDETCKHVTRAVNLRLMGDSEKGTICPNYPQCNGRLIRKYTEADLYKQLAYFSHILDTVRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSLRDRSAYGWVQLQDFVVTV 1549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40010927 40026453 - Tan0019498.1 Tan05g1616 752924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1616 1549 Gene3D - 581 897 IPR036397 GO:0003676(InterPro)
Tan05g1616 1549 SUPERFAMILY DNA/RNA polymerases 865 1317 IPR043502 -
Tan05g1616 1549 Gene3D DNA Polymerase alpha, zinc finger 1340 1533 IPR038256 -
Tan05g1616 1549 PRINTS DNA-directed DNA-polymerase family B signature 938 951 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan05g1616 1549 PRINTS DNA-directed DNA-polymerase family B signature 1067 1075 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan05g1616 1549 PRINTS DNA-directed DNA-polymerase family B signature 1014 1026 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan05g1616 1549 Pfam DNA polymerase family B, exonuclease domain 521 775 IPR006133 -
Tan05g1616 1549 Gene3D - 368 567 - -
Tan05g1616 1549 Gene3D Palm domain of DNA polymerase 907 1131 IPR023211 -
Tan05g1616 1549 CDD POLBc_alpha 914 1317 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Tan05g1616 1549 SMART polmehr3 581 1081 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan05g1616 1549 Gene3D - 408 534 - -
Tan05g1616 1549 SUPERFAMILY Ribonuclease H-like 363 869 IPR012337 -
Tan05g1616 1549 Pfam DNA polymerase family B 841 1302 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Tan05g1616 1549 FunFam DNA polymerase 1145 1331 - -
Tan05g1616 1549 NCBIfam DNA polymerase (pol2) 51 1299 - -
Tan05g1616 1549 MobiDBLite consensus disorder prediction 88 124 - -
Tan05g1616 1549 ProSitePatterns DNA polymerase family B signature. 1069 1077 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Tan05g1616 1549 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Tan05g1616 1549 FunFam DNA polymerase 581 895 - -
Tan05g1616 1549 FunFam DNA polymerase 408 534 - -
Tan05g1616 1549 Pfam DNA Polymerase alpha zinc finger 1341 1545 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Tan05g1616 1549 Gene3D - 1145 1331 IPR042087 -
Tan05g1616 1549 FunFam DNA polymerase 1340 1535 - -
Tan05g1616 1549 CDD DNA_polB_alpha_exo 581 832 - -
Tan05g1616 1549 FunFam DNA polymerase 979 1028 - -
Tan05g1616 1549 MobiDBLite consensus disorder prediction 1 22 - -
Tan05g1616 1549 MobiDBLite consensus disorder prediction 76 136 - -
Tan05g1616 1549 MobiDBLite consensus disorder prediction 1 18 - -
Tan05g1616 1549 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1547 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Tan05g1616 1549 Coils Coil 1095 1115 - -
Tan05g1616 1549 Gene3D Helix hairpin bin 984 1027 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1616 Tan-Chr5:40010927 Tan08g0578 Tan-Chr8:5924752 4.40E-28 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1616 K02320 - csv:101211201 2656.71