Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1617 ATGGAGTGGGTTCGAGGAGATGAACTGGGTCGTGGGAATTTTGCGACGATCAATTTAGCAAAACTCACAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCGGTATCCTCTGTTTCGCTGAAGAACGAGAAGAAAATTTTGGATCTAATTGGGAGTTGCCCACAAATCGTCACTTGTTTTGGCGATGGATTTAGCGTCGAAAGGGATGGGGAGAAGTATTATAATCTATTCTTAGAGTACGCCAGTGGCGGAAGTCTTGCGGATACTGTGAAATTCCACGGCGGCGGGTTGCCGGAATTTGATGTTCGACGGTACACAAGGGCTATTCTTTGTGGGCTCCGGCACGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTTGGGCTTGCGAAATTGGCGATTGCGACGGCGGCAGAAACAGAGGAGAAATTTGAGTGGAGAGGGACTCCGATGTATATGTCGCCGGAGACGGTGAACGGTGGCGAGTACGCGCCCCCATGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGGCGGAAAGCCGGCGTGGAGGGTTCAGCCGGAAACGGATATATTTGGGCTGATGATGAGGATCGGAGTCGGCGACGAAGTGCCGGAGATGCCAGAGAATTTGTCGGCGGAGGGAAAAGATTTTATCCGGCAGTGTTTCGTGAAGGATCCGACGAAGAGATGGACGGCGGAGATGCTTCTGAATCACCCATTTGTCGCCGGTGCCGGTGAGACTGTTACATTGAAGGAATCAGAACTGATGACGGAATCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCTTCTGATAAACGTAGTGAAGAGTTGAATTTCTGTTGTTCTAATTCGTCGGCGGAGATGATGAGTAGACTCCGGCGGCTAGTGACGGAGATGCCTTTGGATTGGTCTGTTATGGAAAGTTGGGTCACGGTGAGGTGA 1032 50.58 MEWVRGDELGRGNFATINLAKLTKGFDQFPPLMAVKSSVSVSSVSLKNEKKILDLIGSCPQIVTCFGDGFSVERDGEKYYNLFLEYASGGSLADTVKFHGGGLPEFDVRRYTRAILCGLRHVHGNGFVHCDLKLSNVLVFGNGEVKIADFGLAKLAIATAAETEEKFEWRGTPMYMSPETVNGGEYAPPCDVWALGCAVVEMVGGKPAWRVQPETDIFGLMMRIGVGDEVPEMPENLSAEGKDFIRQCFVKDPTKRWTAEMLLNHPFVAGAGETVTLKESELMTESPTGPFDFPEFVCSSDKRSEELNFCCSNSSAEMMSRLRRLVTEMPLDWSVMESWVTVR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40117315 40118355 - Tan0020494.1 Tan05g1617 752925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1617 343 Pfam Protein kinase domain 5 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1617 343 SMART serkin_6 3 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1617 343 Gene3D Transferase(Phosphotransferase) domain 1 2 329 - -
Tan05g1617 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g1617 343 CDD STKc_MAPKKK 2 268 - -
Tan05g1617 343 SUPERFAMILY Protein kinase-like (PK-like) 3 293 IPR011009 -
Tan05g1617 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
Tan05g1617 343 ProSiteProfiles Protein kinase domain profile. 3 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1617 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 269 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1545 Tan-Chr3:71753463 Tan05g1617 Tan-Chr5:40117315 3.00E-118 dispersed
Tan05g1617 Tan-Chr5:40117315 Tan06g0727 Tan-Chr6:5603555 8.40E-57 dispersed
Tan05g1617 Tan-Chr5:40117315 Tan05g0893 Tan-Chr5:7131630 2.70E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67617 PF00069 Pkinase 7.10E-50 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1617 - - - 0.0