Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1617 | ATGGAGTGGGTTCGAGGAGATGAACTGGGTCGTGGGAATTTTGCGACGATCAATTTAGCAAAACTCACAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCGGTATCCTCTGTTTCGCTGAAGAACGAGAAGAAAATTTTGGATCTAATTGGGAGTTGCCCACAAATCGTCACTTGTTTTGGCGATGGATTTAGCGTCGAAAGGGATGGGGAGAAGTATTATAATCTATTCTTAGAGTACGCCAGTGGCGGAAGTCTTGCGGATACTGTGAAATTCCACGGCGGCGGGTTGCCGGAATTTGATGTTCGACGGTACACAAGGGCTATTCTTTGTGGGCTCCGGCACGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTTGGGCTTGCGAAATTGGCGATTGCGACGGCGGCAGAAACAGAGGAGAAATTTGAGTGGAGAGGGACTCCGATGTATATGTCGCCGGAGACGGTGAACGGTGGCGAGTACGCGCCCCCATGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGGCGGAAAGCCGGCGTGGAGGGTTCAGCCGGAAACGGATATATTTGGGCTGATGATGAGGATCGGAGTCGGCGACGAAGTGCCGGAGATGCCAGAGAATTTGTCGGCGGAGGGAAAAGATTTTATCCGGCAGTGTTTCGTGAAGGATCCGACGAAGAGATGGACGGCGGAGATGCTTCTGAATCACCCATTTGTCGCCGGTGCCGGTGAGACTGTTACATTGAAGGAATCAGAACTGATGACGGAATCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCTTCTGATAAACGTAGTGAAGAGTTGAATTTCTGTTGTTCTAATTCGTCGGCGGAGATGATGAGTAGACTCCGGCGGCTAGTGACGGAGATGCCTTTGGATTGGTCTGTTATGGAAAGTTGGGTCACGGTGAGGTGA | 1032 | 50.58 | MEWVRGDELGRGNFATINLAKLTKGFDQFPPLMAVKSSVSVSSVSLKNEKKILDLIGSCPQIVTCFGDGFSVERDGEKYYNLFLEYASGGSLADTVKFHGGGLPEFDVRRYTRAILCGLRHVHGNGFVHCDLKLSNVLVFGNGEVKIADFGLAKLAIATAAETEEKFEWRGTPMYMSPETVNGGEYAPPCDVWALGCAVVEMVGGKPAWRVQPETDIFGLMMRIGVGDEVPEMPENLSAEGKDFIRQCFVKDPTKRWTAEMLLNHPFVAGAGETVTLKESELMTESPTGPFDFPEFVCSSDKRSEELNFCCSNSSAEMMSRLRRLVTEMPLDWSVMESWVTVR | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40117315 | 40118355 | - | Tan0020494.1 | Tan05g1617 | 752925 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1617 | 343 | Pfam | Protein kinase domain | 5 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan05g1617 | 343 | SMART | serkin_6 | 3 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan05g1617 | 343 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 329 | - | - | |
Tan05g1617 | 343 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 127 | 139 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan05g1617 | 343 | CDD | STKc_MAPKKK | 2 | 268 | - | - | |
Tan05g1617 | 343 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 293 | IPR011009 | - | |
Tan05g1617 | 343 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 36 | IPR017441 | GO:0005524(InterPro) | |
Tan05g1617 | 343 | ProSiteProfiles | Protein kinase domain profile. | 3 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan05g1617 | 343 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 269 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1545 | Tan-Chr3:71753463 | Tan05g1617 | Tan-Chr5:40117315 | 3.00E-118 | dispersed | |
Tan05g1617 | Tan-Chr5:40117315 | Tan06g0727 | Tan-Chr6:5603555 | 8.40E-57 | dispersed | |
Tan05g1617 | Tan-Chr5:40117315 | Tan05g0893 | Tan-Chr5:7131630 | 2.70E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67617 | PF00069 | Pkinase | 7.10E-50 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1617 | - | - | - | 0.0 |