Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1634 ATGTGGGATCTCAATGATTCGCCCGATCATGGTGGAACTGATGAATTTGAGGGCATTTCGTCCATTGACGGCGATGACGACAGAGGGAAATGGGTAGGATCCATTAATTCCAACTCGAGCTCTTCCGCGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCCAGCGCCGGCGAGGGCGAACCGCTAGACCACCGGAAGAACTTCTCGGTAACACACCCGCCGGCGACTCGGCAGTTCTTCCCCCTGGAGGATTCCGACGTGGGTGCTTCATCGGCCGGCGGTGGTTCTACTGCGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGTCGGAGCCTGTCGCCGCCGTGAGACCAGTGGCGGTTCTGCAACCAATAAAGAAAAGCCGGCGAGGGCCGAGGTCTCGGAGCTCCCAATATCGCGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCTCATATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGACACTGCTCATTCAGCTGCTCGAGCTTATGATAGGGCGGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAACTTCAGCATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGCAAACAAAGCACAGGTTATCCGAGAGGAAGCTCGAAATTCAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTATATCTGGGGTTGTTCGATTCTGAGATCGAAGCTGCGAGGGCTTATGACAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACAAACTTTGATCCCAGCATATATGAGAATGAGCTTAGTACAACAGAATCATCATCAGGCAAAGTCTTGGAACAGAATCTTGATTTGAGGTTGGGAAATTCAAGCTCAAAACAAAACACCCTTTCATTTGGGAATCATTGCCCAAATGCCACCGATAAAAGTGATTTGCAAAATAAGGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTAGAAGATGTACATTCCTTCAAACAGAGAACATGCAATTTTGTAGCGAAACGATCGTTCGGTCTCCACCCTCTATCGATACGACGATACATGGGCACTTGGAGACACCTGTGGAATTGCAGACTCTTCACAATTACTCTCCACACTTCAATCAATCAAACTCTCAAGTAAGACTTTAG 1257 48.61 MWDLNDSPDHGGTDEFEGISSIDGDDDRGKWVGSINSNSSSSAVVMEDGSDADEASAGEGEPLDHRKNFSVTHPPATRQFFPLEDSDVGASSAGGGSTAFPRARWVGVKFCQSEPVAAVRPVAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTEADINFSIEDYEEDLKQMGNLTKEEFVHVLRKQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELSTTESSSGKVLEQNLDLRLGNSSSKQNTLSFGNHCPNATDKSDLQNKESNPQESNIFENDNGRRCTFLQTENMQFCSETIVRSPPSIDTTIHGHLETPVELQTLHNYSPHFNQSNSQVRL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42524991 42528346 - Tan0016407.2 Tan05g1634 752942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1634 418 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 SUPERFAMILY DNA-binding domain 232 292 IPR016177 GO:0003677(InterPro)
Tan05g1634 418 CDD AP2 141 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 SMART rav1_2 233 296 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 SMART rav1_2 141 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 MobiDBLite consensus disorder prediction 1 71 - -
Tan05g1634 418 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 346 - -
Tan05g1634 418 FunFam AP2-like ethylene-responsive transcription factor 232 292 - -
Tan05g1634 418 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 Gene3D AP2/ERF domain 232 291 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 MobiDBLite consensus disorder prediction 320 359 - -
Tan05g1634 418 CDD AP2 232 292 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 Pfam AP2 domain 141 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 Pfam AP2 domain 232 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677(InterPro)
Tan05g1634 418 MobiDBLite consensus disorder prediction 32 46 - -
Tan05g1634 418 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 PRINTS Ethylene responsive element binding protein signature 272 292 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 ProSiteProfiles AP2/ERF domain profile. 233 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1634 418 FunFam AP2-like ethylene-responsive transcription factor 140 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1634 Tan-Chr5:42524991 Tan08g1929 Tan-Chr8:71547037 5.40E-90 dispersed
Tan05g1633 Tan-Chr5:42524991 Tan05g1634 Tan-Chr5:42524991 2.10E-242 tandem
Tan05g1634 Tan-Chr5:42524991 Tan05g1635 Tan-Chr5:42524991 2.90E-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27515 PF00847 AP2 1.60E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1634 K09284 - csv:101208665 692.96