Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1635 ATGTTGTTGAATTTGATGATCCCCCAACAGGCGGATTTGACACTGCTCATTCAGCTGCTCGGTGAGCCTCCGATTTTAATGTGTTTTTGGTTTGTCTCTCTTCTTGAACTCAAACTGCAAATCAACATGAGGAAATTCTTCTGCAGAGCTTATGATAGGGCGGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAACTTCAGCATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGCAAACAAAGCACAGGTTATCCGAGAGGAAGCTCGAAATTCAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTATATCTGGGGTTGTTCGATTCTGAGATCGAAGCTGCGAGGGCTTATGACAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACAAACTTTGATCCCAGCATATATGAGAATGAGCTTAGTACAACAGAATCATCATCAGGCAAAGTCTTGGAACAGAATCTTGATTTGAGGTTGGGAAATTCAAGCTCAAAACAAAACACCCTTTCATTTGGGAATCATTGCCCAAATGCCACCGATAAAAGTGATTTGCAAAATAAGGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTAGAAGATGTACATTCCTTCAAACAGAGAACATGCAATTTTGTAGCGAAACGATCGTTCGGTCTCCACCCTCTATCGATACGACGATACATGGGCACTTGGAGACACCTGTGGAATTGCAGACTCTTCACAATTACTCTCCACACTTCAATCAATCAAACTCTCAAATTGAGTTGTTAAGCAGCAGCAATGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAACTGCTGCAGCATCATCAGGATTCCCACAAATTCAAATTTCAACTTCCCCAAATTGGCTGCAGAAAAATAATGCATGTTTCTTAGAGAGGCCCTCTTGA 1065 41.88 MLLNLMIPQQADLTLLIQLLGEPPILMCFWFVSLLELKLQINMRKFFCRAYDRAAIKFRGTEADINFSIEDYEEDLKQMGNLTKEEFVHVLRKQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELSTTESSSGKVLEQNLDLRLGNSSSKQNTLSFGNHCPNATDKSDLQNKESNPQESNIFENDNGRRCTFLQTENMQFCSETIVRSPPSIDTTIHGHLETPVELQTLHNYSPHFNQSNSQIELLSSSNGGLGSDELSLCLSEGHQWQQSGGSQQFATAAASSGFPQIQISTSPNWLQKNNACFLERPS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42524991 42527470 - Tan0016407.3 Tan05g1635 752943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1635 354 Gene3D AP2/ERF domain 47 70 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1635 354 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1635 354 CDD AP2 103 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1635 354 FunFam AP2-like ethylene-responsive transcription factor 103 163 - -
Tan05g1635 354 PRINTS Ethylene responsive element binding protein signature 143 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1635 354 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1635 354 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 230 - -
Tan05g1635 354 SMART rav1_2 104 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1635 354 Pfam AP2 domain 103 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1635 354 MobiDBLite consensus disorder prediction 191 230 - -
Tan05g1635 354 SUPERFAMILY DNA-binding domain 103 163 IPR016177 GO:0003677(InterPro)
Tan05g1635 354 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1633 Tan-Chr5:42524991 Tan05g1635 Tan-Chr5:42524991 1.10E-174 dispersed
Tan05g1635 Tan-Chr5:42524991 Tan08g1929 Tan-Chr8:71547037 4.60E-58 dispersed
Tan05g1634 Tan-Chr5:42524991 Tan05g1635 Tan-Chr5:42524991 2.90E-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27516 PF00847 AP2 1.30E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1635 K09284 - csv:101208665 474.552