Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1640 ATGAAAGGGGGAGAAGAACAGAAGAATCAGCAGAATCAAAAACCGTACAAAGGGATAAGGATGAGAAAGTGGGGGAAATGGGTCGCTGAAATTCGAGAGCCCAACAAACGCTCTCGAATTTGGCTTGGTTCCTACTCCTCTCCCGTCGCCGCCGCCCGTGCTTACGACACCGCCGTCTTCCACCTCCGCGGCCCTTCCGCCCGCCTCAATTTTCCTGACTTTTTCACCTCCACCGACCGCCCTTTTCCCCTCCCCGCCGACATCTCCGCCGCCACCGTCCGCAAGATTGCCGCCGAGGTCGGCGCCCGTGTTGACGCCCTCGAGTCCTCTCTCCGTCACCACTTTCATAACTGTAGAAACACCGACCAAACTCCTTCCACGCCGCCGCCACCCACGAAGCTTCGTTCTGATTCCGGTGGGTTTTCCGATCGGGTTGACCTCAATAAATTGCCCGATCCGGAAGACTCCGATGGTGACTGCGCTAGCACTCCATGGACAACCTGA 504 57.54 MKGGEEQKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPDFFTSTDRPFPLPADISAATVRKIAAEVGARVDALESSLRHHFHNCRNTDQTPSTPPPPTKLRSDSGGFSDRVDLNKLPDPEDSDGDCASTPWTT 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42919343 42919938 - Tan0013713.1 Tan05g1640 752948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1640 167 SMART rav1_2 15 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1640 167 MobiDBLite consensus disorder prediction 139 156 - -
Tan05g1640 167 PRINTS Ethylene responsive element binding protein signature 54 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1640 167 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1640 167 Pfam AP2 domain 16 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1640 167 CDD AP2 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1640 167 MobiDBLite consensus disorder prediction 117 167 - -
Tan05g1640 167 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1640 167 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677(InterPro)
Tan05g1640 167 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1640 167 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Tan05g1640 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4750 Tan-Chr1:113328167 Tan05g1640 Tan-Chr5:42919343 1.90E-37 dispersed
Tan02g1788 Tan-Chr2:83138908 Tan05g1640 Tan-Chr5:42919343 1.20E-36 dispersed
Tan05g1640 Tan-Chr5:42919343 Tan10g1945 Tan-Chr10:62525167 1.40E-20 dispersed
Tan05g1640 Tan-Chr5:42919343 Tan03g1563 Tan-Chr3:71896518 2.90E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27517 PF00847 AP2 1.10E-10 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1640 K09286 - csv:101209150 218.779