Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1662 ATGGATACCTTGTTCAAGCTGGTCTCTGATTTTCAATCGTCCGATCAATCTTACAACTCGAGCAGCAGCTCAAAGAATTCTGCTGATCAAAATCATTACTACCTTCAACCACGACCTGAAGAATGCTTCGAGAGCTTGTTCATGGAGGACGAAGATCATTTCTCTGCGTCCTCTTCTTCAAAGCAAAAGCATCATCATCATCATCACCATCGTCGTCCCGATCAACCCCAGCCGTTTCAATGTTATTCCACCACCACGGCTAGTACTGCTTCTACCGGTACCACCACTCCGACCGATCAACGGTTCTCCCCTTTCACCGGAGACCTGAACTTCGAGTTCTCCGAGGATTGGGCCTCTACGTTACTCCTCCAAACAGCCATCGCCATTGTCGACAACAACACATGTCGAATGCAACAACTCATGTGGATGCTGAACGAGCTTGGTTCTCCCTACGGGGATATTGATCAGAAGCTGGCTTTTTACTTCCTTCAAGCGATGTTCAGTCGTGTCACTGACTCCGGTGACAGGTGCTACAAGACGTTGGCGTCGGTATCGGAGAAACGGTGCTGTTTCGAGTCGATGAGAAGAATGGTGTTGAAGTTTCAGGAGGTGAGTCCATGGATGACGTTTGGTCATGTTGCTTCAAATGGTGCAATCATGGAAGCTTTTGAAGGAGAAAAGAAGTTGCATATAATTGATATTAGCAACTCATTTTGCACTCAATGGCCGACTTTCCTAGAAGCTCTTGCAACGCGGTCAGATGAAACTCCATACCTCCGCCTCACAACGGTTGTTGCAGCCAAATCAGACGGTACCATACGAGCTCATAAGAAGGTGATGAGAGAAATTAGCACAAGAATGGAGAAATTCGCCAGGCTTATGGGGGTTCCGTTCAAATTCAAATCAATATTTCACTCCGGCGATATTGCAGACATAAATTTCACAGAATTAGGCGTCAAAGACGACGAAGCCGTCGCCATCAACTGCGTCGGCGCGTTGCGCTCCGTCACTCCGGTGGAAAACCGCCGCGATTTTCTGATATCTCTGTTCGGAGCTTTGCGGCCGAGGGTAATCACGGTAGTGGAGGAGGAAGCGGATTTCCACGGCGTTGACTTTGTCAAAGACGTTCAAGAGTGTTTACGGTGGTTTAGGGTTTACTTCGATTCCTTGGACGGAAATTTCCCGACGGCCAGTGACGAGCAGTTGATACTTGAACGCGCCGCGGGACGCGCCGTCGTGGACCTGTTGTCAGCCCCCTTGGCGGGGTCTGTTGAGAGGCGCGAGACGGCGGCGCGTTGGGCTCGTCGTTTGCATGAGGGTGGTTTCAGTCCGGTGTCGTTTAGCGAGGATGTAAACGATGACGTACGAGCGCTTTTGAGGAGGTATAAGGACGGGTGGACGGTGTCGAAGGAAAGCGAGGGCGCCGGTGCCGGAATTTTCTTGGCTTGGAAAGGGCAGCCGGTTGTTTGGGCCGCCGCGTGGACCACAGGGCGGAGAGAAAAGTCGCCGGAGTAG 1515 51.09 MDTLFKLVSDFQSSDQSYNSSSSSKNSADQNHYYLQPRPEECFESLFMEDEDHFSASSSSKQKHHHHHHHRRPDQPQPFQCYSTTTASTASTGTTTPTDQRFSPFTGDLNFEFSEDWASTLLLQTAIAIVDNNTCRMQQLMWMLNELGSPYGDIDQKLAFYFLQAMFSRVTDSGDRCYKTLASVSEKRCCFESMRRMVLKFQEVSPWMTFGHVASNGAIMEAFEGEKKLHIIDISNSFCTQWPTFLEALATRSDETPYLRLTTVVAAKSDGTIRAHKKVMREISTRMEKFARLMGVPFKFKSIFHSGDIADINFTELGVKDDEAVAINCVGALRSVTPVENRRDFLISLFGALRPRVITVVEEEADFHGVDFVKDVQECLRWFRVYFDSLDGNFPTASDEQLILERAAGRAVVDLLSAPLAGSVERRETAARWARRLHEGGFSPVSFSEDVNDDVRALLRRYKDGWTVSKESEGAGAGIFLAWKGQPVVWAAAWTTGRREKSPE 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46198852 46202259 + Tan0005571.1 Tan05g1662 752970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1662 504 ProSiteProfiles GRAS family profile. 109 495 IPR005202 -
Tan05g1662 504 MobiDBLite consensus disorder prediction 77 101 - -
Tan05g1662 504 MobiDBLite consensus disorder prediction 54 101 - -
Tan05g1662 504 Pfam GRAS domain family 120 495 IPR005202 -
Tan05g1662 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 72 494 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1662 Tan-Chr5:46198852 Tan11g1747 Tan-Chr11:17753713 1.30E-37 dispersed
Tan05g1662 Tan-Chr5:46198852 Tan05g1663 Tan-Chr5:46199895 1.30E-215 tandem
Tan02g0295 Tan-Chr2:2496942 Tan05g1662 Tan-Chr5:46198852 7.30E-45 transposed
Tan03g1648 Tan-Chr3:72577461 Tan05g1662 Tan-Chr5:46198852 1.70E-39 transposed
Tan03g1662 Tan-Chr3:72716270 Tan05g1662 Tan-Chr5:46198852 2.90E-151 transposed
Tan06g0133 Tan-Chr6:1242771 Tan05g1662 Tan-Chr5:46198852 1.70E-30 transposed
Tan06g1555 Tan-Chr6:24044318 Tan05g1662 Tan-Chr5:46198852 1.00E-110 transposed
Tan09g0798 Tan-Chr9:58659799 Tan05g1662 Tan-Chr5:46198852 3.90E-28 transposed
Tan09g2333 Tan-Chr9:73102534 Tan05g1662 Tan-Chr5:46198852 1.30E-21 transposed
Tan05g1662 Tan-Chr5:46198852 Tan06g1914 Tan-Chr6:56379395 5.40E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27519 PF03514 GRAS 1.20E-96 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1662 K27743 - csv:101210294 660.218