Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1685 ATGGACGACATTGACATACTGAAATCGACACTATCCCCATCCGAGTCCATCGACATGTCGTCCACAATCTTCCAGTTCCAGCTCAACAACAATCCCCACTACTCTCCACTACCCTTCTTCTCCGATTTCTCATCTCCCTCCTTCTTCCCAGACCCGCCACCACCACCGCACCACCACCGCCAGAAGCGCTCCGGAAGCGGAGGCGGAATGGCGGCGATGAGAGAAATGATATTCCGAATAGCGGCGATGCAGCCGATACAGATAGACCCGGAGGCGATAAAGGCACCGAAGCGGCGGAACGTGAGGATCTCGAAGGACCCACAGAGCGTGGCGGCGCGTCACCGTCGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTCCCCGGCGGCACGAAGATGGACACGGCGTCGATGCTTGATGAGGCGGTTCATTATGTGAAGTTCTTGAAAAGGCAAGTTCAGACGCTGGAGCAGGCTGGCTTTCACAATACTAATACTGATATTAATATTAATTATAATAATTCCAGTTTTCCGAATTGTGCCAATCTTAGTTATTCTTCGGCCCTTTTCAAAGCTTGCCAGATGCCCCACAATCAAACTATGCCTGGTTCTCTGCAAATGCATTGA 636 51.73 MDDIDILKSTLSPSESIDMSSTIFQFQLNNNPHYSPLPFFSDFSSPSFFPDPPPPPHHHRQKRSGSGGGMAAMREMIFRIAAMQPIQIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTNTDININYNNSSFPNCANLSYSSALFKACQMPHNQTMPGSLQMH 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49618688 49619682 - Tan0014971.1 Tan05g1685 752993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1685 211 Gene3D - 102 171 IPR036638 GO:0046983(InterPro)
Tan05g1685 211 MobiDBLite consensus disorder prediction 46 68 - -
Tan05g1685 211 Pfam Helix-loop-helix DNA-binding domain 112 153 IPR011598 GO:0046983(InterPro)
Tan05g1685 211 CDD bHLH_AtIND_like 104 160 - -
Tan05g1685 211 SMART finulus 109 158 IPR011598 GO:0046983(InterPro)
Tan05g1685 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983(InterPro)
Tan05g1685 211 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 29 198 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1685 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 161 IPR036638 GO:0046983(InterPro)
Tan05g1685 211 Coils Coil 142 162 - -
Tan05g1685 211 FunFam BHLH transcription factor 106 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4766 Tan-Chr1:113495252 Tan05g1685 Tan-Chr5:49618688 6.50E-38 dispersed
Tan02g1808 Tan-Chr2:83613506 Tan05g1685 Tan-Chr5:49618688 4.10E-39 dispersed
Tan03g0769 Tan-Chr3:63654686 Tan05g1685 Tan-Chr5:49618688 4.30E-18 dispersed
Tan03g1315 Tan-Chr3:69651855 Tan05g1685 Tan-Chr5:49618688 3.20E-34 dispersed
Tan04g2726 Tan-Chr4:86745543 Tan05g1685 Tan-Chr5:49618688 8.90E-25 dispersed
Tan05g1685 Tan-Chr5:49618688 Tan06g0202 Tan-Chr6:1768502 1.60E-29 dispersed
Tan02g0299 Tan-Chr2:2543325 Tan05g1685 Tan-Chr5:49618688 2.70E-09 transposed
Tan05g1754 Tan-Chr5:54874455 Tan05g1685 Tan-Chr5:49618688 3.10E-70 transposed
Tan05g1685 Tan-Chr5:49618688 Tan06g1902 Tan-Chr6:54341331 4.90E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27521 PF00010 HLH 7.90E-07 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1685 - - - 0.0