Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1724 ATGGATGAATCCACTCTGAGGAGAAAGGTGCAGAGGAAATCAAAAATCAGAGGTTACAGCATCAAACTAGATGGTCTCTCCGAAATTGTTTCCTTTGCCTCTCGCTTCGATGGCTGTGAAGACGACGCTATAGATTTGGTTCTCGACCATCTCCATGACGAATCCTTGCAATCTTCGATAATAGACAAGGATGCAGTGCATCGTGTTGTCAGCATTCTACTTGCAGCTGATGAAGTGGGAGAAGAAAGTCCCGACACCATTACTAGTACATCCGCTCTTTGTATCATAGACGCTTTTGATATCTCCAGGTTTCGTTATGATCCCATCAAGAAGATCTTCCACCTGCACACAGGAAACCTTCTAATTCATGGGGATGCTTCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTCCTACTTTCCCAAAGGCTTTCTCGAGACGAGCATTTCTCCAAACCCGCTTTTGACACTGGCATGTCTCTTTTTGGAAGTTGTGAGATTTCTCCTATTCTATCTCTGGAGGGGCAAACAGGGAGCAAATGGGTCATGGGAGTGATCTCTCAGATGGAGGATGGCCACTTTTACTTGGAGGACCTTACTGCATCTGTGAAAATTGATTTATCTAGTGCTAAGATAACTACAGGTCTATTTACAGAGAACACCATCGTTGTAGCAGAAGGAAAGATGCTCATGGGGAACGTTTTCCAGGTTATTACATGTGGGTTTCCTCCATTAGAGGACAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTGCTCTAACTAAAGAGGAGACTCTCAGGCTTGCAGATCTGGAAAAGAAAGCCATTAATGATATGTTTGTCATACTCTCTGATGTTTGGTTGGATAGTGAAGAGGCTATGGGAAAACTGGAGACCATTCTTGATGGGTTTGAGAATGTGGAAGTGGTTCCTTCCTTGTTTGTTTTGATGGGGAATTTTTGTTCTCGTCCATGTAATCTTGCCTTCAATTCTTTCTCAAGTCTCAGATCACAATTTGGTAAGCTAGGAAAAATGATAGCAGCTCATCCACGATTAAAAGAGCATAGCAGGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGAACATCAACCGTTCTACCTAGGTGTGCTTTGCCAAAGTATTTAACCGAAGAGCTTCAGATGCATGTCCCAAATGCCATCTTCTCAAGTAACCCTTGCAGGGTAAGGTTCTACACCCAGGAAATTGTATTTTTCCGACAGGACCTACTTTATAGAATGCGTCGTTCTTGTCTCATACCACCTTCTACAGAAGAAACAAGTGATCCTTTTGAGCATCTTGTTGCTACCATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGCTATTCAACCAATTATCTGGAACTATGACCACTGTCTTCATCTTTATCCTACTCCTCATGTGATAGTTCTAGGGGATAGAAGTAAGCAACAAGCATTCAAATACACCGGAATTACTTGCTTCAATCCTGGTTCCTTCACTAATGACAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAATTATCTGCCTTGTAA 1587 42.66 MDESTLRRKVQRKSKIRGYSIKLDGLSEIVSFASRFDGCEDDAIDLVLDHLHDESLQSSIIDKDAVHRVVSILLAADEVGEESPDTITSTSALCIIDAFDISRFRYDPIKKIFHLHTGNLLIHGDASAKAALYRDRFLLLSQRLSRDEHFSKPAFDTGMSLFGSCEISPILSLEGQTGSKWVMGVISQMEDGHFYLEDLTASVKIDLSSAKITTGLFTENTIVVAEGKMLMGNVFQVITCGFPPLEDRDKSLKLLAGQDFFGGGALTKEETLRLADLEKKAINDMFVILSDVWLDSEEAMGKLETILDGFENVEVVPSLFVLMGNFCSRPCNLAFNSFSSLRSQFGKLGKMIAAHPRLKEHSRFLFIPGPDDAGTSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLAIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52710031 52734022 + Tan0020044.2 Tan05g1724 753032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1724 528 PIRSF DNA_pol_epsilon_2 1 528 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0008622(InterPro)
Tan05g1724 528 Gene3D - 294 524 - -
Tan05g1724 528 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 4 528 IPR016266 GO:0003677(InterPro)|GO:0006261(PANTHER)|GO:0006261(InterPro)|GO:0008622(InterPro)|GO:0008622(PANTHER)|GO:0042276(PANTHER)
Tan05g1724 528 Gene3D - 1 72 - -
Tan05g1724 528 Pfam DNA polymerase alpha/epsilon subunit B 286 491 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1723 Tan-Chr5:52710031 Tan05g1724 Tan-Chr5:52710031 1.9e-310 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1724 K02325 - csv:101207444 940.258