Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g1770 | ATGTCGGGCCAAAGCCAGCGATTGAATGTGGTTCCAACAGTTACAATGCTTGGAGCTATGAAAGCCCGACTTGTTGGTGCAACCAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTTTGACTGTCCAATTCCGTCAGATACTCAAGAAGATTGTCTCAGCTAAGGAATCAATGGGGGAAGTTATGAAGACATCTTCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTCCTTGAGAATGTCCAAACTGCAGCTATTAAAATTCGATCCCGGCAGGAGAATATTGCTGGTGTAAAACTCCCGAAGTTTGAACATTATTCTGATGGTGAGACCAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGAGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCTTCACTTCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAATGCTTTAGAGAATGTTGTGAAGCCGAGGCTAGAGAATACTATAAGTTACATAAAGGGAGAATTGGACGAGCTAGAAAGAGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTACAAGAGAAGAGAAATTGAGAAACAACGTGCCAATGCCAAGCTATATGCTGAGGAACAACTTACGGCGAAGATATCATTGCAAAAGGGCATCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGACGACGATATTATTTTTTGA | 786 | 42.62 | MSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGEVMKTSSFSLTEAKYVAGDNIKHIVLENVQTAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLYAEEQLTAKISLQKGISISSAHNLLSAAAEKDDDIIF | 261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 57536861 | 57539920 | - | Tan0021007.1 | Tan05g1770 | 753078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g1770 | 261 | Gene3D | - | 1 | 198 | - | - | |
| Tan05g1770 | 261 | FunFam | V-type proton ATPase subunit D | 1 | 198 | - | - | |
| Tan05g1770 | 261 | Coils | Coil | 179 | 199 | - | - | |
| Tan05g1770 | 261 | PANTHER | V-TYPE ATP SYNTHASE SUBUNIT D | 1 | 261 | IPR002699 | GO:0005774(PANTHER)|GO:0033176(PANTHER)|GO:0046961(InterPro) | |
| Tan05g1770 | 261 | Pfam | ATP synthase subunit D | 17 | 208 | IPR002699 | GO:0046961(InterPro) | |
| Tan05g1770 | 261 | NCBIfam | V-type ATP synthase subunit D | 9 | 211 | IPR002699 | GO:0046961(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan02g0107 | Tan-Chr2:1092245 | Tan05g1770 | Tan-Chr5:57536861 | 1.90E-133 | dispersed | |
| Tan02g0108 | Tan-Chr2:1092245 | Tan05g1770 | Tan-Chr5:57536861 | 1.90E-133 | dispersed | |
| Tan05g1770 | Tan-Chr5:57536861 | Tan05g1771 | Tan-Chr5:57536861 | 7.40E-138 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g1770 | K02149 | - | csv:101213101 | 482.641 |