Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1838 ATGGCCTCAAAGACGAGTTCGAAACCTTCTGCAAAGCAAACTAAAGGGATAACCATCGTTAAAGCGAATGATGCAAGTGATCTAAAGTCCTTACCTTCACAGACTTCATTGGGAAACAAAATTGGTTCAGTTATCTCTGGAGGAGATGTATCAAACCCCACACAGAGATCCTTGAATCAGTCTACTTTGATTGATTCATCAAATACCAAATCTTCAAGTTTGAATCCTAAAGAGTCTACTGAGTCTTGTAATCAGAAAGTCAAAGAAAATTCCTTGAAGCCTGGCTCTAAGACATTGACAGAAGGAGATCCTTCTCTTAGCGGGACTCGAGGCTTAGCGGATGACTCTATAGATCAAGAGAAGAAAACATCAGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTCTTGCTAAGACCAGTGGAAGTGCAAAAATTAGCGACCGTGTCGAGATGGTTGAGAGTGGCAAGAGCAGTATGTGTCGAGGAAGCACAAGTAGCGACATCAGTGACGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCAATCCAAGCTGTACGTGCAAGGGATGGGATTTTGGGATTGGGCCATTTTAGACTATTGAAGAGACTGGGTTGTGGCGATATCGGAAGCGTCTACCTGTCGGAATTGAGTGGCACTAAATGTTATTTTGCAATGAAGGTCATGGACAAAGGGTCTCTAGCAAGTCGAAAGAAGTTGCTTCGCGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTCCCTACATTATATACTCATTTTGAGACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGACAACCAGGGAAGCATTTTCCTGAACAGGCGGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATCGTATACCGGGACCTTAAGCCTGAGAATGTTCTCGTGAGGGAAGATGGACACATAATGCTTTCGGACTTCGATCTTTCCCTAAGATGTGCTGTTAGTCCAACACTGGTGAAGGGTTCATGTTCTGAGTCCGAACCCTTGAGAAAGAATCCAGTTTATTGCGTTCAGCCGGCTTGTATTGAGCCTTCCTGCATCCAGCCATCCTGTGTAGTCCCCACGTCGTGCTTCACTCCCCGGCTTTTCTCTAGCAAGTCAAAGAAGGATAGAAGACCCAAGACTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCATTGCAGAGCCTACCGAGGCGAGGTCAATGTCATTCGTTGGTACACATGAGTACTTGGCACCGGAGATCATTAAAGGTGAAGGTCATGGAAGTGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATACGAACTTTTGTTTGGTAAAACTCCTTTCAAGGGATCTGGGAATCGAGCAACATTGTTTAATGTCGTTGGTCAGCCTTTGCGCTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGAGGATTGCTTGTCAAGGAACCCCAGCATAGATTAGCTTACAAAAGAGGGGCAACTGAGATCAAGCAACACCCGTTCTTTGAAGGTGTTAACTGGGCATTGATACGATGCGCATCGCCACCAGAAGTACCGAAGCCTGTCGAGATTGAGAGGATACCATCACCAGCACCTCCAGTCAGTGGAAAAGCTGTAATGGTTAGACCTGGTCCTGATTCCAAATCGTCTGATAATTATCTTGAGTTTGATTTCTTTTAG 1842 45.28 MASKTSSKPSAKQTKGITIVKANDASDLKSLPSQTSLGNKIGSVISGGDVSNPTQRSLNQSTLIDSSNTKSSSLNPKESTESCNQKVKENSLKPGSKTLTEGDPSLSGTRGLADDSIDQEKKTSECGSGKDSSVSAKVSDGTNSLAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNPVYCVQPACIEPSCIQPSCVVPTSCFTPRLFSSKSKKDRRPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAVMVRPGPDSKSSDNYLEFDFF 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 62340206 62342513 + Tan0010132.1 Tan05g1838 753146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1838 613 MobiDBLite consensus disorder prediction 27 105 - -
Tan05g1838 613 FunFam Serine/threonine-protein kinase D6PK-like 217 302 - -
Tan05g1838 613 ProSiteProfiles Protein kinase domain profile. 219 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1838 613 FunFam Serine/threonine-protein kinase AGC1-7 449 574 - -
Tan05g1838 613 Gene3D Transferase(Phosphotransferase) domain 1 450 574 - -
Tan05g1838 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g1838 613 FunFam serine/threonine-protein kinase D6PK-like 303 370 - -
Tan05g1838 613 MobiDBLite consensus disorder prediction 128 151 - -
Tan05g1838 613 CDD STKc_phototropin_like 218 579 - -
Tan05g1838 613 MobiDBLite consensus disorder prediction 1 20 - -
Tan05g1838 613 Gene3D Phosphorylase Kinase; domain 1 217 302 - -
Tan05g1838 613 SUPERFAMILY Protein kinase-like (PK-like) 195 586 IPR011009 -
Tan05g1838 613 Gene3D Transferase(Phosphotransferase) domain 1 303 371 - -
Tan05g1838 613 SMART serkin_6 219 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1838 613 PANTHER FLIPPASE KINASE 1-RELATED 88 576 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Tan05g1838 613 MobiDBLite consensus disorder prediction 166 180 - -
Tan05g1838 613 MobiDBLite consensus disorder prediction 1 180 - -
Tan05g1838 613 Pfam Protein kinase domain 220 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1838 613 Pfam Protein kinase domain 453 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2210 Tan-Chr3:76562627 Tan05g1838 Tan-Chr5:62340206 6.00E-247 dispersed
Tan05g0143 Tan-Chr5:1135434 Tan05g1838 Tan-Chr5:62340206 6.80E-148 dispersed
Tan05g1838 Tan-Chr5:62340206 Tan08g0220 Tan-Chr8:1979177 3.50E-114 dispersed
Tan03g0174 Tan-Chr3:29022825 Tan05g1838 Tan-Chr5:62340206 8.40E-150 transposed
Tan05g2687 Tan-Chr5:78551388 Tan05g1838 Tan-Chr5:62340206 2.30E-102 transposed
Tan07g1405 Tan-Chr7:65077508 Tan05g1838 Tan-Chr5:62340206 1.20E-195 transposed
Tan10g0017 Tan-Chr10:455220 Tan05g1838 Tan-Chr5:62340206 1.50E-188 transposed
Tan03g2209 Tan-Chr3:76562627 Tan05g1838 Tan-Chr5:62340206 6.00E-247 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67623 PF00069 Pkinase 9.80E-37 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1838 K08286 - csv:101213662 1100.12