Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1851 ATGACGAGAAAGAAGGTGAAACTGGCATTCATCACAAACGACGCAGCAAGAAAAGCCACATTCAAAAAACGAAAAAAAGGGTTTTTGAAGAAGCTCACCGAACTCACCACTCTCTGCGGGATCGAGGCCTGCGCCATAATCTTCAGCCCCTTCAATTTCCCCCCTGACCTCTGGCCCTCCGCCGTTGGCGTCCAGAGGGTTCTCTCTCAGTTCAAAAGCCTGCCGGAGATGGAACAGTGCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATCGCCAAGGCTGCCGATCAGCTCAAGAAGCTTCAGAGGGAGAATCGGGAGAAGGAGATCACTGATGTCATGTTTCGGAGCCTCGACGCCGGAGGGGCACTGCCACCCGGTCTCAATGTGATAGATTTGAATGATCTTGGGTGGCTGGTTGATCAGAAGGTGGCGGATATTTGCAAGAGGATGGAGTTGCTTACGACAGCGGTGGCGATGGCGGTGAAACAATCTCCGTGCGTGGCGGCGGTGGAGCCATCGTGGTTCATGGAGATGGTGAGTCAAGGAGATCATGAGGATCAAATGGGATTCAATATTGGGGATGATGTGATTCAGCTTCCTAATTTTGGGGAGGATGAGAACCATGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 672 51.64 MTRKKVKLAFITNDAARKATFKKRKKGFLKKLTELTTLCGIEACAIIFSPFNFPPDLWPSAVGVQRVLSQFKSLPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEITDVMFRSLDAGGALPPGLNVIDLNDLGWLVDQKVADICKRMELLTTAVAMAVKQSPCVAAVEPSWFMEMVSQGDHEDQMGFNIGDDVIQLPNFGEDENHGAFWSNNAFFP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63208972 63209643 + Tan0002126.1 Tan05g1851 753159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1851 223 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Tan05g1851 223 Coils Coil 87 114 - -
Tan05g1851 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 PANTHER MADS BOX PROTEIN 1 114 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g1851 223 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Tan05g1851 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1851 Tan-Chr5:63208972 Tan09g0041 Tan-Chr9:1995565 2.50E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27532 PF00319 SRF-TF 4.30E-16 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1851 - - - 0.0