Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1851 | ATGACGAGAAAGAAGGTGAAACTGGCATTCATCACAAACGACGCAGCAAGAAAAGCCACATTCAAAAAACGAAAAAAAGGGTTTTTGAAGAAGCTCACCGAACTCACCACTCTCTGCGGGATCGAGGCCTGCGCCATAATCTTCAGCCCCTTCAATTTCCCCCCTGACCTCTGGCCCTCCGCCGTTGGCGTCCAGAGGGTTCTCTCTCAGTTCAAAAGCCTGCCGGAGATGGAACAGTGCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATCGCCAAGGCTGCCGATCAGCTCAAGAAGCTTCAGAGGGAGAATCGGGAGAAGGAGATCACTGATGTCATGTTTCGGAGCCTCGACGCCGGAGGGGCACTGCCACCCGGTCTCAATGTGATAGATTTGAATGATCTTGGGTGGCTGGTTGATCAGAAGGTGGCGGATATTTGCAAGAGGATGGAGTTGCTTACGACAGCGGTGGCGATGGCGGTGAAACAATCTCCGTGCGTGGCGGCGGTGGAGCCATCGTGGTTCATGGAGATGGTGAGTCAAGGAGATCATGAGGATCAAATGGGATTCAATATTGGGGATGATGTGATTCAGCTTCCTAATTTTGGGGAGGATGAGAACCATGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA | 672 | 51.64 | MTRKKVKLAFITNDAARKATFKKRKKGFLKKLTELTTLCGIEACAIIFSPFNFPPDLWPSAVGVQRVLSQFKSLPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEITDVMFRSLDAGGALPPGLNVIDLNDLGWLVDQKVADICKRMELLTTAVAMAVKQSPCVAAVEPSWFMEMVSQGDHEDQMGFNIGDDVIQLPNFGEDENHGAFWSNNAFFP | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 63208972 | 63209643 | + | Tan0002126.1 | Tan05g1851 | 753159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1851 | 223 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan05g1851 | 223 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Tan05g1851 | 223 | Coils | Coil | 87 | 114 | - | - | |
Tan05g1851 | 223 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan05g1851 | 223 | PANTHER | MADS BOX PROTEIN | 1 | 114 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan05g1851 | 223 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Tan05g1851 | 223 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan05g1851 | 223 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan05g1851 | 223 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan05g1851 | 223 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan05g1851 | 223 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan05g1851 | 223 | SUPERFAMILY | SRF-like | 1 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1851 | Tan-Chr5:63208972 | Tan09g0041 | Tan-Chr9:1995565 | 2.50E-65 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27532 | PF00319 | SRF-TF | 4.30E-16 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1851 | - | - | - | 0.0 |