Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1851 ATGACGAGAAAGAAGGTGAAACTGGCATTCATCACAAACGACGCAGCAAGAAAAGCCACATTCAAAAAACGAAAAAAAGGGTTTTTGAAGAAGCTCACCGAACTCACCACTCTCTGCGGGATCGAGGCCTGCGCCATAATCTTCAGCCCCTTCAATTTCCCCCCTGACCTCTGGCCCTCCGCCGTTGGCGTCCAGAGGGTTCTCTCTCAGTTCAAAAGCCTGCCGGAGATGGAACAGTGCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATCGCCAAGGCTGCCGATCAGCTCAAGAAGCTTCAGAGGGAGAATCGGGAGAAGGAGATCACTGATGTCATGTTTCGGAGCCTCGACGCCGGAGGGGCACTGCCACCCGGTCTCAATGTGATAGATTTGAATGATCTTGGGTGGCTGGTTGATCAGAAGGTGGCGGATATTTGCAAGAGGATGGAGTTGCTTACGACAGCGGTGGCGATGGCGGTGAAACAATCTCCGTGCGTGGCGGCGGTGGAGCCATCGTGGTTCATGGAGATGGTGAGTCAAGGAGATCATGAGGATCAAATGGGATTCAATATTGGGGATGATGTGATTCAGCTTCCTAATTTTGGGGAGGATGAGAACCATGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 672 51.64 MTRKKVKLAFITNDAARKATFKKRKKGFLKKLTELTTLCGIEACAIIFSPFNFPPDLWPSAVGVQRVLSQFKSLPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEITDVMFRSLDAGGALPPGLNVIDLNDLGWLVDQKVADICKRMELLTTAVAMAVKQSPCVAAVEPSWFMEMVSQGDHEDQMGFNIGDDVIQLPNFGEDENHGAFWSNNAFFP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63208972 63209643 + Tan0002126.1 Tan05g1851 753159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1851 223 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Tan05g1851 223 Coils Coil 87 114 - -
Tan05g1851 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 PANTHER MADS BOX PROTEIN 1 114 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g1851 223 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Tan05g1851 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g1851 223 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1851 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1851 Tan-Chr5:63208972 Tan09g0041 Tan-Chr9:1995565 2.50E-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27532 PF00319 SRF-TF 4.30E-16 No_clan Tan TF