Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1889 ATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCCAAGCTGTCTGATTCCGATAAGAGGAATTCTCTCCAGAGAAGAAGATCTAACCGTCATGGAAGATTTTCACGTTCGGTAGAGGATAATAATCAACCACAAAATTGTGACGAAACGTCTCATCAATGTATGGTTGTTACACAAGTTAGTTTTAGGAAAGTATTTGTTCTGCTGGCTACTTATTTGGGAGGAGGCACAATGTGTTTCTTCCTTGTTCAGGATCAGATCAATGGCAAGAAAACAAACGGGATTGTTGATTCCCTTTACTTTTGTGTTGTGACAATGACCACTGTTGGATATGGTGATCTTGTTCCGAATAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTGTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCGGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAGATCAGCTCTAGTGAGATCCTTCAGGAATCTGAGGCTCACAAACTCAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGTTCTCGTCGTTGTTGGTACTCTTTTCTTGATTGTGGTTGAGAAGCTAGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACAACTCTTGGCTATGGGGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTCGCGGAATTACACACAGAAAGGAGACAGAAATCACTAGTGAATTGGGTTCTCTCCCGAGACCTCACTTACTCAGATCTTGAAGAAGCAGACCTTGATCAGGATAAAGTAGTAAGTGCTGCCGAATTTGTTATATATAAACTGAAGGAAATGGGAAAGATCAATCAGGAAGATGTTTCACCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATATTTAACAGAAGCTGATTTAGTAACTTCATAG 1026 40.74 MDSGDVEQSLLPKLSDSDKRNSLQRRRSNRHGRFSRSVEDNNQPQNCDETSHQCMVVTQVSFRKVFVLLATYLGGGTMCFFLVQDQINGKKTNGIVDSLYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWVLVVVGTLFLIVVEKLEFTDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQKSLVNWVLSRDLTYSDLEEADLDQDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGYLTEADLVTS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65513505 65514669 - Tan0007002.1 Tan05g1889 753197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1889 341 SUPERFAMILY Voltage-gated potassium channels 59 162 - -
Tan05g1889 341 Gene3D - 158 272 - -
Tan05g1889 341 FunFam Calcium-activated outward-rectifying potassium channel 1 59 154 - -
Tan05g1889 341 MobiDBLite consensus disorder prediction 1 48 - -
Tan05g1889 341 SUPERFAMILY EF-hand 271 339 IPR011992 -
Tan05g1889 341 ProSiteProfiles EF-hand calcium-binding domain profile. 313 341 IPR002048 GO:0005509(InterPro)
Tan05g1889 341 Pfam Ion channel 68 148 IPR013099 -
Tan05g1889 341 Pfam Ion channel 190 260 IPR013099 -
Tan05g1889 341 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Tan05g1889 341 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Tan05g1889 341 Gene3D - 57 153 - -
Tan05g1889 341 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 93 288 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Tan05g1889 341 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Tan05g1889 341 SUPERFAMILY Voltage-gated potassium channels 178 277 - -
Tan05g1889 341 Gene3D - 281 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3185 Tan-Chr1:85590895 Tan05g1889 Tan-Chr5:65513505 4.30E-96 dispersed
Tan03g2663 Tan-Chr3:79677610 Tan05g1889 Tan-Chr5:65513505 3.60E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1889 K05389 - csv:101214791 588.956