Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1965 ATGTCTCAGGATTTGTCTTTGGATCAAGACCCGGATGAATCTGATCCCGAATTCGTGGAGATTGATCCTACTGGGCGATACGGACGGTATAAGGAAATTTTAGGGAAAGGGGCATTCAAAAAAGTATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAAGTAACAGATCTATTGCGGAATTCTGAAGATTTGGAGCGACTCTATTCAGAAGTTCATTTGCTGAAGACGTTGAAGCATAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAAAATATCAACTTCATTACTGAGATATTCACTTCAGGGACACTGCGGCAATATAGAAAGAAACACAAGCATGTTGATTTGAGGGCACTGAAAAAGTGGTCTAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTCAATGGTAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCCATTCTTCAACAAGCTCGTTCAGCTCACAGTGTCATTGGGACGCCGGAGTTTATGGCTCCAGAGCTGTACGAGGAGGAATACAATGAGCTTGTTGATATTTATGCATTTGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCCGCTCAAATATATAAGAAGGTCACATCAGGGATAAAGCCAGCTTCATTGGCAAAAGTCACCGATGGAGGAGTTAGAGCATTTATAGAAAAATGTATTGCAAATGTCTCCAATCGTTTGCCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCAACCAGATGATGATCATGAAAGTATATCTCGTCATTTACATCCCAAAATACATCATACAGAAAAAAGAGAGCATATTGTTATTGATAGAAGTGTAGATGATATTTCTGCTGAAACTAGTAGAGACTTTAGCATGCATGGTCAGAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGATTCAATGGGTAATTTCCGCAATATCCATTTTCCATTTGATATTGAAGCCGACACAACAATTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGATCTTTCAGATCAAGATGTCTCCACGATTTCTGACATGATTGAAACGGAAATTCGATCTTGCATACCAGATTGGACATCAGTTGACTATTCTATAGATAATGCAGGAGCAGATGTTGCAATTTCTGATAGCTCTACATCTGAAACAAAGAATGTTGCGTCTCCCTTGTCTATTGAATCTGGTAACCTTGCATTAGAGGTAATGCCTTCAGGTCGCAAGTATTGGTCTGACTCTCCAAAGGGAATGGGTGGATGCTCTCCAGTTAGGCCAGGTCCTTCAAACTTGTCTCTTACCTTGGATGTTGAATCCTCTAGTAGCCACATGCATGGGGATGATTTGGATCATGCTGCTATAATTAAGGGATTGGAAAGTGAGCTTTTGTTTGAGGATGGTGCTAATGTTGAGCAGGATGAGAGTAACCCAACTACAAATCTTCATGCTAGCTCTCATTCCTCAGAAGAGAACTGTGGAGTTTCAGAACATGATGAATCAATTGACGTCGAGATAATGGTTGAGAAACTTGAAAATTTGTTGACGCAACAAAAAAAGGAATTAGATGAACTAAAGAACAAGCATAAATTAGCTATTTCAGAACTTCTGACTGAACTTACACCTGAGTCCTATCAGGAAGTTTTAGAAATGTGTAAGCTAAAGCATTCTGATTTTGAGTTGGTTCTCTGA 1818 38.78 MSQDLSLDQDPDESDPEFVEIDPTGRYGRYKEILGKGAFKKVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSNRLPAKDLLRDPFLQPDDDHESISRHLHPKIHHTEKREHIVIDRSVDDISAETSRDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTTISVASEMVEELDLSDQDVSTISDMIETEIRSCIPDWTSVDYSIDNAGADVAISDSSTSETKNVASPLSIESGNLALEVMPSGRKYWSDSPKGMGGCSPVRPGPSNLSLTLDVESSSSHMHGDDLDHAAIIKGLESELLFEDGANVEQDESNPTTNLHASSHSSEENCGVSEHDESIDVEIMVEKLENLLTQQKKELDELKNKHKLAISELLTELTPESYQEVLEMCKLKHSDFELVL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69268198 69272108 + Tan0013002.1 Tan05g1965 753273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1965 605 CDD STKc_WNK 26 286 - -
Tan05g1965 605 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1965 605 Coils Coil 550 577 - -
Tan05g1965 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g1965 605 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
Tan05g1965 605 SUPERFAMILY Protein kinase-like (PK-like) 30 312 IPR011009 -
Tan05g1965 605 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 575 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Tan05g1965 605 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Tan05g1965 605 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Tan05g1965 605 MobiDBLite consensus disorder prediction 514 533 - -
Tan05g1965 605 Gene3D - 339 422 - -
Tan05g1965 605 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1965 605 MobiDBLite consensus disorder prediction 514 538 - -
Tan05g1965 605 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Tan05g1965 605 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1965 605 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0964 Tan-Chr5:7942348 Tan05g1965 Tan-Chr5:69268198 1.80E-100 dispersed
Tan05g1965 Tan-Chr5:69268198 Tan06g2524 Tan-Chr6:77851752 8.80E-142 dispersed
Tan05g1965 Tan-Chr5:69268198 Tan05g1966 Tan-Chr5:69268198 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67629 PF00069 Pkinase 1.50E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1965 K08867 - csv:101206177 1034.25