Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1966 ATGTGGATATCTAGATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAAGTAACAGATCTATTGCGGAATTCTGAAGATTTGGAGCGACTCTATTCAGAAGTTCATTTGCTGAAGACGTTGAAGCATAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAAAATATCAACTTCATTACTGAGATATTCACTTCAGGGACACTGCGGCAATATAGAAAGAAACACAAGCATGTTGATTTGAGGGCACTGAAAAAGTGGTCTAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTCAATGGTAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCCATTCTTCAACAAGCTCGTTCAGCTCACAGTGTCATTGGGACGCCGGAGTTTATGGCTCCAGAGCTGTACGAGGAGGAATACAATGAGCTTGTTGATATTTATGCATTTGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCCGCTCAAATATATAAGAAGGTCACATCAGGGATAAAGCCAGCTTCATTGGCAAAAGTCACCGATGGAGGAGTTAGAGCATTTATAGAAAAATGTATTGCAAATGTCTCCAATCGTTTGCCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCAACCAGATGATGATCATGAAAGTATATCTCGTCATTTACATCCCAAAATACATCATACAGAAAAAAGAGAGCATATTGTTATTGATAGAAGTGTAGATGATATTTCTGCTGAAACTAGTAGAGACTTTAGCATGCATGGTCAGAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGATTCAATGGGTAATTTCCGCAATATCCATTTTCCATTTGATATTGAAGCCGACACAACAATTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGATCTTTCAGATCAAGATGTCTCCACGATTTCTGACATGATTGAAACGGAAATTCGATCTTGCATACCAGATTGGACATCAGTTGACTATTCTATAGATAATGCAGGAGCAGATGTTGCAATTTCTGATAGCTCTACATCTGAAACAAAGAATGTTGCGTCTCCCTTGTCTATTGAATCTGGTAACCTTGCATTAGAGGTAATGCCTTCAGGTCGCAAGTATTGGTCTGACTCTCCAAAGGGAATGGGTGGATGCTCTCCAGTTAGGCCAGGTCCTTCAAACTTGTCTCTTACCTTGGATGTTGAATCCTCTAGTAGCCACATGCATGGGGATGATTTGGATCATGCTGCTATAATTAAGGGATTGGAAAGTGAGCTTTTGTTTGAGGATGGTGCTAATGTTGAGCAGGATGAGAGTAACCCAACTACAAATCTTCATGCTAGCTCTCATTCCTCAGAAGAGAACTGTGGAGTTTCAGAACATGATGAATCAATTGACGTCGAGATAATGGTTGAGAAACTTGAAAATTTGTTGACGCAACAAAAAAAGGAATTAGATGAACTAAAGAACAAGCATAAATTAGCTATTTCAGAACTTCTGACTGAACTTACACCTGAGTCCTATCAGGAAGTTTTAGAAATGTGTAAGCTAAAGCATTCTGATTTTGAGTTGGTTCTCTGA 1707 38.37 MWISRYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSNRLPAKDLLRDPFLQPDDDHESISRHLHPKIHHTEKREHIVIDRSVDDISAETSRDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTTISVASEMVEELDLSDQDVSTISDMIETEIRSCIPDWTSVDYSIDNAGADVAISDSSTSETKNVASPLSIESGNLALEVMPSGRKYWSDSPKGMGGCSPVRPGPSNLSLTLDVESSSSHMHGDDLDHAAIIKGLESELLFEDGANVEQDESNPTTNLHASSHSSEENCGVSEHDESIDVEIMVEKLENLLTQQKKELDELKNKHKLAISELLTELTPESYQEVLEMCKLKHSDFELVL 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69268198 69272108 + Tan0013002.2 Tan05g1966 753274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1966 568 CDD STKc_WNK 6 249 - -
Tan05g1966 568 FunFam probable serine/threonine-protein kinase WNK9 74 254 - -
Tan05g1966 568 SMART serkin_6 6 249 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1966 568 MobiDBLite consensus disorder prediction 477 501 - -
Tan05g1966 568 MobiDBLite consensus disorder prediction 477 496 - -
Tan05g1966 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g1966 568 Gene3D Phosphorylase Kinase; domain 1 4 72 - -
Tan05g1966 568 FunFam Probable serine/threonine-protein kinase WNK1 3 72 - -
Tan05g1966 568 SUPERFAMILY Protein kinase-like (PK-like) 6 275 IPR011009 -
Tan05g1966 568 Coils Coil 513 540 - -
Tan05g1966 568 Gene3D Transferase(Phosphotransferase) domain 1 74 256 - -
Tan05g1966 568 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 306 360 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Tan05g1966 568 Pfam Protein kinase domain 6 249 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1966 568 Gene3D - 302 385 - -
Tan05g1966 568 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g1966 568 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 538 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1966 Tan-Chr5:69268198 Tan06g2524 Tan-Chr6:77851752 4.40E-127 dispersed
Tan05g1965 Tan-Chr5:69268198 Tan05g1966 Tan-Chr5:69268198 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67630 PF00069 Pkinase 1.40E-44 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1966 K08867 - csv:101206177 956.822