Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1966 | ATGTGGATATCTAGATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAAGTAACAGATCTATTGCGGAATTCTGAAGATTTGGAGCGACTCTATTCAGAAGTTCATTTGCTGAAGACGTTGAAGCATAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAAAATATCAACTTCATTACTGAGATATTCACTTCAGGGACACTGCGGCAATATAGAAAGAAACACAAGCATGTTGATTTGAGGGCACTGAAAAAGTGGTCTAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTCAATGGTAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCCATTCTTCAACAAGCTCGTTCAGCTCACAGTGTCATTGGGACGCCGGAGTTTATGGCTCCAGAGCTGTACGAGGAGGAATACAATGAGCTTGTTGATATTTATGCATTTGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCCGCTCAAATATATAAGAAGGTCACATCAGGGATAAAGCCAGCTTCATTGGCAAAAGTCACCGATGGAGGAGTTAGAGCATTTATAGAAAAATGTATTGCAAATGTCTCCAATCGTTTGCCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCAACCAGATGATGATCATGAAAGTATATCTCGTCATTTACATCCCAAAATACATCATACAGAAAAAAGAGAGCATATTGTTATTGATAGAAGTGTAGATGATATTTCTGCTGAAACTAGTAGAGACTTTAGCATGCATGGTCAGAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGATTCAATGGGTAATTTCCGCAATATCCATTTTCCATTTGATATTGAAGCCGACACAACAATTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGATCTTTCAGATCAAGATGTCTCCACGATTTCTGACATGATTGAAACGGAAATTCGATCTTGCATACCAGATTGGACATCAGTTGACTATTCTATAGATAATGCAGGAGCAGATGTTGCAATTTCTGATAGCTCTACATCTGAAACAAAGAATGTTGCGTCTCCCTTGTCTATTGAATCTGGTAACCTTGCATTAGAGGTAATGCCTTCAGGTCGCAAGTATTGGTCTGACTCTCCAAAGGGAATGGGTGGATGCTCTCCAGTTAGGCCAGGTCCTTCAAACTTGTCTCTTACCTTGGATGTTGAATCCTCTAGTAGCCACATGCATGGGGATGATTTGGATCATGCTGCTATAATTAAGGGATTGGAAAGTGAGCTTTTGTTTGAGGATGGTGCTAATGTTGAGCAGGATGAGAGTAACCCAACTACAAATCTTCATGCTAGCTCTCATTCCTCAGAAGAGAACTGTGGAGTTTCAGAACATGATGAATCAATTGACGTCGAGATAATGGTTGAGAAACTTGAAAATTTGTTGACGCAACAAAAAAAGGAATTAGATGAACTAAAGAACAAGCATAAATTAGCTATTTCAGAACTTCTGACTGAACTTACACCTGAGTCCTATCAGGAAGTTTTAGAAATGTGTAAGCTAAAGCATTCTGATTTTGAGTTGGTTCTCTGA | 1707 | 38.37 | MWISRYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSNRLPAKDLLRDPFLQPDDDHESISRHLHPKIHHTEKREHIVIDRSVDDISAETSRDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTTISVASEMVEELDLSDQDVSTISDMIETEIRSCIPDWTSVDYSIDNAGADVAISDSSTSETKNVASPLSIESGNLALEVMPSGRKYWSDSPKGMGGCSPVRPGPSNLSLTLDVESSSSHMHGDDLDHAAIIKGLESELLFEDGANVEQDESNPTTNLHASSHSSEENCGVSEHDESIDVEIMVEKLENLLTQQKKELDELKNKHKLAISELLTELTPESYQEVLEMCKLKHSDFELVL | 568 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 69268198 | 69272108 | + | Tan0013002.2 | Tan05g1966 | 753274 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1966 | 568 | CDD | STKc_WNK | 6 | 249 | - | - | |
Tan05g1966 | 568 | FunFam | probable serine/threonine-protein kinase WNK9 | 74 | 254 | - | - | |
Tan05g1966 | 568 | SMART | serkin_6 | 6 | 249 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan05g1966 | 568 | MobiDBLite | consensus disorder prediction | 477 | 501 | - | - | |
Tan05g1966 | 568 | MobiDBLite | consensus disorder prediction | 477 | 496 | - | - | |
Tan05g1966 | 568 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 115 | 127 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan05g1966 | 568 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 72 | - | - | |
Tan05g1966 | 568 | FunFam | Probable serine/threonine-protein kinase WNK1 | 3 | 72 | - | - | |
Tan05g1966 | 568 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 275 | IPR011009 | - | |
Tan05g1966 | 568 | Coils | Coil | 513 | 540 | - | - | |
Tan05g1966 | 568 | Gene3D | Transferase(Phosphotransferase) domain 1 | 74 | 256 | - | - | |
Tan05g1966 | 568 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 306 | 360 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Tan05g1966 | 568 | Pfam | Protein kinase domain | 6 | 249 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan05g1966 | 568 | Gene3D | - | 302 | 385 | - | - | |
Tan05g1966 | 568 | ProSiteProfiles | Protein kinase domain profile. | 1 | 249 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan05g1966 | 568 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 6 | 538 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1966 | Tan-Chr5:69268198 | Tan06g2524 | Tan-Chr6:77851752 | 4.40E-127 | dispersed | |
Tan05g1965 | Tan-Chr5:69268198 | Tan05g1966 | Tan-Chr5:69268198 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67630 | PF00069 | Pkinase | 1.40E-44 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1966 | K08867 | - | csv:101206177 | 956.822 |