Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1980 ATGGCATCATCATCGTCAACAACAACAAACAGCCATTATTACAGTCCTTGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTACCAGGATGTGTATTTGCACCGTATTTTCCACCAGAGGAACCTCAAAAATTCGCCAATGTCCACAAGGTTTTTGGAGCCAGTAACGTGGCCAAGCTCCTCAATGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCGCTCGCCTACGAAGCCGAGTCGAGAATAAGAGATCCTGTTTATGGCTGTGTTGGTGCAATTTTCTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAACTTGATGCAGCTAAAGCTCGCCTTTTTCTCTACTCTTGCACTGATTTTTCAGCTCCCTTTTCATCTCATCAGCCTCAGATTATTACTCCTCCACTGATTTGGAATGATCATCATCATCATAATAATAATAATAATAATAATAATGTTGTTTCTGCTAATTCTTCTATATGTACTTTAATGGAGGAATTTGAAGGAATTAGGTTCCATGGCTTGAGTTGA 543 40.52 MASSSSTTTNSHYYSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAESRIRDPVYGCVGAIFFLQKQVQRLQKELDAAKARLFLYSCTDFSAPFSSHQPQIITPPLIWNDHHHHNNNNNNNNVVSANSSICTLMEEFEGIRFHGLS 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69437201 69439097 + Tan0012086.1 Tan05g1980 753288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1980 180 Coils Coil 95 115 - -
Tan05g1980 180 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Tan05g1980 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 146 - -
Tan05g1980 180 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1980 Tan-Chr5:69437201 Tan07g1392 Tan-Chr7:64748048 8.10E-51 dispersed
Tan11g0653 Tan-Chr11:5740323 Tan05g1980 Tan-Chr5:69437201 1.00E-44 wgd
Tan05g1980 Tan-Chr5:69437201 Tan09g2289 Tan-Chr9:72856130 5.10E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27535 PF03195 LOB 9.50E-42 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1980 - - - 0.0