Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2003 ATGCAGAGCTCTGCGGTTACTTTCTCGCCTTCTCTTCCTCTTCTCAAGCCTCGGAGGCCTTCGAGTTCGTCCTTCAGCTCTGGATGTAACTCAATTCGGTTGTCTTCTTCGTCTTCCTCAAATTCCAGAGAACTCGGAGACCTGAACAATGTTGGTTTCCCTTCCTCTTGGCCCCGGCGATCTTGGACTCTATCGTCGTCTCCTTTTTCGTCCGCGAAACTCCGGCCATGGACTGGTGTGCCCTTGCTTGCTTCGGATTCTGATGCGAGTCATTTCAAGGTTCAGGCCACTGCGGTGCCGGATAGCTCAGGAGAGGCCGCCAGTGCTGGCGGTAACCTAATGAAAACGTTAGAGCTAGGGTTGTTGTTTGGCCTCTGGTACCTGTTCAACATCTACTTTAACATCTACAACAAGCAGGTCCTCAAGGTGTTTCCATTCCCTGTGACTGTCACTATGGTTCAATTTGCTGTAGGCACTGTACTTGTTCTTCTTATGTGGGGACTTAATCTCTACAAAAAGCCAAAGATTAGTAGTGCTCAGCTTGCTGCTATTCTGCCACTGGCATTTGTTCACACATTGGGAAATCTTTTTACAAATATGAGTCTCGGGAAAGTGGCAGTATCATTCACTCACACAATCAAAGCTATGGAGCCGTTCTTTTCAGTTATCCTGTCGGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTAGTTGCATCTCTTCTGCCAATTGTTGGTGGTGTTGCATTGGCATCTGCAACTGAGGCCTCCTTCAACTGGGCTGGATTTTGGAGTGCAATGGCATCCAATTTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGAGTCAATTGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTATTGTCCCCTGTGGCTATCTTCATGGAAGGTGTCAAGTTTACTCCTACATACCTTCAATCAGCTGGATTGAACGTGAAACAAGTATACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCAGTTGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAGACACCTGTTTCTCCAATCAACTCTCTTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTGTATTCAAGGGTTAAGCGCATCAAAGCCAAGGCGAAGACAGCTTAA 1260 46.03 MQSSAVTFSPSLPLLKPRRPSSSSFSSGCNSIRLSSSSSSNSRELGDLNNVGFPSSWPRRSWTLSSSPFSSAKLRPWTGVPLLASDSDASHFKVQATAVPDSSGEAASAGGNLMKTLELGLLFGLWYLFNIYFNIYNKQVLKVFPFPVTVTMVQFAVGTVLVLLMWGLNLYKKPKISSAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGETPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNLTNQSRNVLSKKVMVKKEESIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPTYLQSAGLNVKQVYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKAKTA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69968059 69972170 + Tan0014306.1 Tan05g2003 753311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2003 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Tan05g2003 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 331 410 - -
Tan05g2003 419 PANTHER SOLUTE CARRIER FAMILY 35 112 408 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Tan05g2003 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 162 252 - -
Tan05g2003 419 MobiDBLite consensus disorder prediction 1 43 - -
Tan05g2003 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4525 Tan-Chr1:110984590 Tan05g2003 Tan-Chr5:69968059 7.20E-60 transposed
Tan03g2333 Tan-Chr3:77306985 Tan05g2003 Tan-Chr5:69968059 3.80E-61 transposed
Tan03g2514 Tan-Chr3:78495374 Tan05g2003 Tan-Chr5:69968059 2.20E-51 transposed
Tan10g0406 Tan-Chr10:3269368 Tan05g2003 Tan-Chr5:69968059 7.90E-65 transposed
Tan11g0640 Tan-Chr11:5654707 Tan05g2003 Tan-Chr5:69968059 1.20E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2003 K15283 - csv:101203848 681.019