Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2004 ATGGAAGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATAAGAGGAAGACTTCTATGCTACAAACAGGATTGGACTGGCGGACTTCGCTCTGGTATCAGGATCTTGGCCCCAACAACGTACATATTCTTTGCTTCAGCAATTCCAGTTATATCGTTTGGGGAGCAGCTAGAAAGGAATACATACGGGACTCTAACTGCCGTACAAACTCTAGCATCAACGGCACTTTGCGGCATCATCCACTCGATCTTTGGGGGACAGCCTCTGCTCATCCTTGGGGTCGCTGAACCAACTGTTTTGATGTATACATTTATGTTCGACTTTGCAAAGGACCGAAAGGAACTGGGGCAGGAACTATTCTTAGCCTGGACGGGATGGGTATGTGTATGGACAGCCATTTTGCTTTTCTTGCTGGCTGTGTTGGGTGCATGCTCCCTGATCAATAGGTTTACACGTCTTGCTGGAGAACTGTTTGGTCTGCTAATTGCTATGCTGTTTATGCAGCAGGCAATACGTGGTGTTGTGGAGGAATTCGGCATACCTCAGAGGGAAAATCCTAATCAGTTGGCACTTCAACCTCCTTGGCGCTTTGGCAATGGAATGTTTGCATTAGTGTTGTCCTTTGGGCTTCTACTAACTGCCCTTAAAAGTCGCAAGGCTAGATCATGGCGCTATGGGACTGGTTGCCTACGGGGCTTTATCGCGGATTATGGAGTTCCGCTTATGGTGCTTGTATGGACAGCCTTATCTTACATTCCAGTTAACAATGTCCCACTTGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCCTACTCAAATTGGACGGTTGTAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTTCTCCTAGGTTTCCTTGTTATACTATGTGGACTTATAGGCATACCACCTTCCAATGGTGTAATTCCTCAGTCTCCGATGCACACGAAAAGCCTAGCTACTCTAAAACATCAGCTTTTGCGGAACAAGCTGGTAGCAGCAGCGCGTCAAAGTTTTCGTAAAAATTCAAACTTGAGTCAATTATACCGGAACATGCAAGAGGCATATACTGAGATGCAGACTCCTTTAATTTACCAAAACCCACCAGCTGCGGGGCTGAAGGAGTTGAAAGATACCACAATCCAACTAGCTTCAAGAACTGGCTACATTGATGCTCCTGTTGATGAAACTATTTTCGATGTGGATAAAGATATTGATGATCTTCTGCCAGTGGAAGTTAAAGAACAGCGTCTCAGCAATTTGCTTCAGGCAATAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTTTTAAAGAAGATCCCGACTTCAGTTCTTTGGGGCTACTTTGCTTTCATGGCAATTGAGAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTACTGCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTTGAGGAATATCATGCAACCTTCCTAGAAACTGTCCCCTTCAAAACAATTGCAACCTTTACCTTGTTTCAGACAGTATATCTGCTGATGTGTTTTGGTTTAACCTGGATTCCAATTGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTCGTCCCTGTGCGGCAGTATTTGCTCCCCAGGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCAGCTGAATACGAGGAAGCCCCTGCAATCGCTTTTAATCCGTCGTTCGAAGATCGAGTGGGAAGAACTCCCAACATTGATGACGGTGAAATATTCGACGAGATGATCACAAGGAGCCGTGGCGAGATTCGGCGTACGCAGAGTTCGAAAGTGACAAGCTCAACCCCAACTTCTCTAGAGGGCATCAAACCTGCATACAGCCCACAGATACCACAGAAACTGTACAGTCCAAGGATCAATGAGCTGAGAAGAGAAAGAAGTTCTCTATCTCCTGGAAAAGGACTTGACTTTAAGCTAAGTCCTCCTAGTGCAGAAGCAGGACCAGGACCATCTTTTAGAAATTAG 2145 44.85 MEETFFPFRGIKNDIRGRLLCYKQDWTGGLRSGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSIFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGIPQRENPNQLALQPPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPLMVLVWTALSYIPVNNVPLGIPRRLFSPNPWSQGAYSNWTVVKEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVAAARQSFRKNSNLSQLYRNMQEAYTEMQTPLIYQNPPAAGLKELKDTTIQLASRTGYIDAPVDETIFDVDKDIDDLLPVEVKEQRLSNLLQAIMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPRFFKGAHLQDLDAAEYEEAPAIAFNPSFEDRVGRTPNIDDGEIFDEMITRSRGEIRRTQSSKVTSSTPTSLEGIKPAYSPQIPQKLYSPRINELRRERSSLSPGKGLDFKLSPPSAEAGPGPSFRN 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69974347 69981178 - Tan0017552.1 Tan05g2004 753312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2004 714 Gene3D Helical hairpin bin 18 60 - -
Tan05g2004 714 PANTHER ANION EXCHANGE PROTEIN 6 638 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Tan05g2004 714 MobiDBLite consensus disorder prediction 646 662 - -
Tan05g2004 714 MobiDBLite consensus disorder prediction 643 714 - -
Tan05g2004 714 FunFam probable boron transporter 2 18 60 - -
Tan05g2004 714 Pfam HCO3- transporter integral membrane domain 7 179 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Tan05g2004 714 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Tan05g2004 714 Pfam HCO3- transporter integral membrane domain 202 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2336 Tan-Chr4:81729512 Tan05g2004 Tan-Chr5:69974347 0.00E+00 dispersed
Tan04g2613 Tan-Chr4:85326527 Tan05g2004 Tan-Chr5:69974347 2.30E-220 dispersed
Tan04g2614 Tan-Chr4:85326527 Tan05g2004 Tan-Chr5:69974347 3.40E-190 dispersed
Tan05g2004 Tan-Chr5:69974347 Tan05g2005 Tan-Chr5:69974347 1.80E-295 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2004 K24194 - csv:101203606 1367.06