Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2008 ATGGCTGGTCCTGGGGAAAACCTACATCCTGAAATTCGTGGTATAAAGGAAGACAACAATCAGCAAGCTGGGGATAAAAACCAGCATGTTGACAAAGAGGGTGGTCTGAGTGGCGGCGAGAGGGACATGGCTTCGGTTACTGGCAATTCCATTCACAGGTCAGGTTCTCGCCCGCAGCTTGACCTCAGTAAAGCTGCAATTCAGGGCAATTTCGAGGACAGACACCCTACAATTCTGTTGCCTAATCAGTCTGATGATATATCTCACCTGGCTCTCGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCAAGGCATGAAGATCAATCGGTTGATGATAAGAGGAGGTGGAGCATGAAGCAGAGGCTGGGGTTTTCAAATGGTAATAGGAGAAGCTATCCAGTTCTCGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACATGCAAGATCAACGAGTGTTTAGACTTCATTCATTCCAAGCAGCTACATCGTGGTGCTTGCAAGGATTTACCTCATTGGCATTCAGATGGCCCGGCAAATGAAAAAGCCATCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCGGATCTTTTTAAGGAAAGACTTGGAGTTAGCCTTGATAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTTAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTCGTGCAACTTGACCATAATGAATTGTTCCCTTTTCTGCTTGTTAACATTGGATCTGGTGTCAGCATGATCAAGGTTGATGGTGATGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGTACTTACTGGGGCTTAGGAAGGCTGTTAACAAAATGTAATAGTTTTGATGAGTTGTTAGAGCTTAGTCAAAAGGGAGACAATAGTGCAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCTAAGATTGGTCTTTCTGCATCAACAATTGCATCTAGTTTTGGCAAGACCATCTCAGAGAACAAGGAGCTTGAGGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAATATTGGACAGATATCGTACTTGAATGCTCTACGGTTTGGACTTAAGAGAATCTTTTTTGGAGGATTCTTTATCAGGGGACATGCTTATACCATGGATACAATTTCCTTTGCGGTTCACTTTTGGTCAAAAGGAGAAGCACAAGCAATGTTTTTGCGTCATGAAGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTCGATGATCTATTGGCCCATCAGTTAGTTGAAAGGTTCCCTATGGGTGCACCATATACAGGAGGGAAAGTTCATGGGCCTCCACTTGGTGATTTGAATGAGAAGATTTCTTGGATGGAGAAATTTTTGCAGAAGGGAACTGAAATAACTGCGCCTGTCCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGGGATCCTGCGATCTGATGCAAGTACCTTAAATGTTGGCGTTCTCCATCTAGTACCCACTTTGGAGGTGTTCCCTCTGTTGGGTGATCCAAAAACATATGAACCTAACACTATTGATCTCTCTGATCACAGTGAGTTGGAGTTCTGGTTCACCGTGCTTTCAGGGCATTTAGCAGACCTTGTTGATAAGGCTGTTGCAAGCGAAGGTGGAACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAGCCTACAGCATACGGAAAATTGGGTTTGGCTAATCTACTGGAACTGAGGGAAGAGTGCTTGAGGGAGTTCCAATTTTTTGATGCCTATAGAAGCATAAAACAGAGGGAGAATGAGGCCTCACTTGCTGTTTTACCTGATCTGCTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTGCTGACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGCTCTCGTGCCTGTGTTGATCTCTATCACAAGGGGACAATAATTGAGATTTACAGAATGAGCCGCAATAAGATGCAGAGGCCATGGCGGGTCGATGATTTTGATGTCTTCAGGGAGAGAATGTTAGGATTTGGGGATAAGAAACCCCTTCCACATAAAAGAGCTCTTCTCTTTGTAGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCCTGGCGAGGGAACTCCTCCGACGTGGAACTGAAGTTGTTTTAGTTGCAAACTCCCTTCCTGCCCTAAATGATGTTACCGCAATGGAGCTTCCTGATATTATAGCTGAGGCTGCCAAGGTTTTTGCAGTTTCCTTGTTTCTACTGTGTTGTATGGCATCAAACATCTGGACTCTGAAATACCACAAAGAGGCATTTAAAGAAATCTTTCAGTTTAATGGGAGGAAAATTCAACATCTTGGTCAAATCTCAAATTGCCGTTCAGTCAATTTAACCAACAAAATTTTGTTTGCAGCACTGTGA 2565 43.98 MAGPGENLHPEIRGIKEDNNQQAGDKNQHVDKEGGLSGGERDMASVTGNSIHRSGSRPQLDLSKAAIQGNFEDRHPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRRWSMKQRLGFSNGNRRSYPVLGGRLHFVKFETCKINECLDFIHSKQLHRGACKDLPHWHSDGPANEKAIIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPFLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELSQKGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISENKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKGTEITAPVPMAPPGTTGLGGFEVPLSKGGILRSDASTLNVGVLHLVPTLEVFPLLGDPKTYEPNTIDLSDHSELEFWFTVLSGHLADLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDVFRERMLGFGDKKPLPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIIAEAAKVFAVSLFLLCCMASNIWTLKYHKEAFKEIFQFNGRKIQHLGQISNCRSVNLTNKILFAAL 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70051763 70073273 + Tan0003683.2 Tan05g2008 753316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2008 854 FunFam Pantothenate kinase 1 89 230 - -
Tan05g2008 854 MobiDBLite consensus disorder prediction 43 59 - -
Tan05g2008 854 SUPERFAMILY Actin-like ATPase domain 203 436 IPR043129 -
Tan05g2008 854 Gene3D - 315 425 - -
Tan05g2008 854 MobiDBLite consensus disorder prediction 10 38 - -
Tan05g2008 854 FunFam Pantothenate kinase 2 81 244 - -
Tan05g2008 854 Gene3D - 549 633 IPR035073 -
Tan05g2008 854 Gene3D - 81 244 - -
Tan05g2008 854 SUPERFAMILY AF1104-like 528 795 IPR036075 -
Tan05g2008 854 PANTHER PANTOTHENATE KINASE 61 793 IPR004567 GO:0004594(PANTHER)|GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0015937(PANTHER)|GO:0015937(InterPro)
Tan05g2008 854 Pfam Damage-control phosphatase ARMT1-like domain 588 794 IPR002791 -
Tan05g2008 854 MobiDBLite consensus disorder prediction 1 59 - -
Tan05g2008 854 Pfam Fumble 89 434 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Tan05g2008 854 SUPERFAMILY Actin-like ATPase domain 87 231 IPR043129 -
Tan05g2008 854 NCBIfam type II pantothenate kinase 89 435 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Tan05g2008 854 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 713 840 - -
Tan05g2008 854 FunFam Pantothenate kinase 2 548 634 - -
Tan05g2008 854 FunFam Pantothenate kinase 2 231 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2008 K24265 - - csv:101203117 1453.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1241 Tan-Chr4:11769324 Tan05g2008 Tan-Chr5:70051763 3.20E-140 dispersed
Tan05g2007 Tan-Chr5:70051763 Tan05g2008 Tan-Chr5:70051763 0.00E+00 tandem
Tan05g2008 Tan-Chr5:70051763 Tan05g2009 Tan-Chr5:70051763 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39