Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2019 ATGTACGCGTTGTCCTCCGTTTCGATTGCTGGCCTTCCCCGTCAACGCGTGCTTGGGCCACCATTCAAGCCGCGCTTTCAAACTTCTTTCAACCGTCGCCATTTGATTACCACTTTGGTTTCTATCTTTACCCCCTCTTTTGCTGATTTTACTCTGCCCTCTTCTTCCGATTTTGCTGTAGCTCGTGGTCTGTTTCAGATGCCCCCTGTTCGTCTCCGTCAATCGTTATCCAAATTTGTTTCTAATGTTCGTTTGAACATTTTTGTGGGGGTGAGAAGATACTTTTTGGTGAGGGCAGGGGAATCTGAATTCGACAGCTTTGGAATAATTAACACAAACCCAGTTGCAAAAACATCTGTTGATAGTGGATTGTCTGAGGAAGGGAAGAAACAAACAGTTAAAGCGGCTTTTAAATTGAAGGAAATGGGGGCCTGTGAATATGGTTGCTGGATATGGCCCTCCATTACACAGAGAGCTTATCAGGCAGCGGAGATTATTGCTTCAGTTAATGGCGTGAATCGAAGTTATATAGTTCCTGAATACAGTTTTCTTGATGCCCGTGGGCTTGGAGCTTATGAAGGCAAGAGTTTGGAGTCTGTGTCAGAAGTATATGCTTCAGATACCATCTCTTCAAGTATCAAACCTCCTCCAATAGATGATGGAACCCCCAACGAGAGCGTATCCGATGTCTTCGTTCGTGTAACACAACTGATGTCGATTCTCGAAACTCAATACTCTGGTGATACTATCATCATTGTCTCACCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTTTAATCGGCCTCGACTTGCGAAGGCACCATGATCTTTCCTTTGCTCCGGGCGAGGTTCGCTTTGTTGACAGAAGTAGCATCCCTTCCTACAAACAACCAGCTTCAGCTGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGGTGGCAGCAACAATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATTCTCTCTATATTGCTCTACCCATTTTTATGTGCGTGGACTGTAATTGGAACTTTATGGTTTAGAGATGCTAAAGACTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTTCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTTCTTTGCATTGCCTGCATGTCAGTAGGAAAGTGGTTAGCACGTAGACAAGCACACTTGATACGTGCCCAACAAGGCATACCCATATCAGAATATGGGGTACTGGTGGATATGATTAGGGTTCCTGATTGGGCATTTGAAGCTGCAGGACTGGAAACACGAGGAATTGGCCAAGATGCTACGGGGTACCATCCCGGGCTTTTCTTAACCTCAGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCGGTCCCAACTGATTGCAGTGAATGCCCGATTTGCCTCGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCGTGTGCTCACAACTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCCCGATGCCGCTCCTCAGTCTTCCCAAATCTCGACCTCAGTGCTCTTTCTAACCTGCGCTCGGACACAGAACAAACATCTTCCAACGGTTTCATAACAAGCCAACCTTCAAGTCTGTTGAGATCCAGTCCAAGCCCCACCGCTCATATGGACGGTGCCTTAGATGCAATGGAGAATGGGAGCTCACCCGTGCCATCTGGTTCTCGACATTAA 1800 46.17 MYALSSVSIAGLPRQRVLGPPFKPRFQTSFNRRHLITTLVSIFTPSFADFTLPSSSDFAVARGLFQMPPVRLRQSLSKFVSNVRLNIFVGVRRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACEYGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKSLESVSEVYASDTISSSIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLSFAPGEVRFVDRSSIPSYKQPASAVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQQYARFCGRVVVLSILSILLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLIRAQQGIPISEYGVLVDMIRVPDWAFEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLRSDTEQTSSNGFITSQPSSLLRSSPSPTAHMDGALDAMENGSSPVPSGSRH 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70171639 70179527 - Tan0021646.1 Tan05g2019 753327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2019 599 ProSiteProfiles Zinc finger RING-type profile. 492 533 IPR001841 -
Tan05g2019 599 MobiDBLite consensus disorder prediction 552 599 - -
Tan05g2019 599 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 303 588 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Tan05g2019 599 MobiDBLite consensus disorder prediction 552 574 - -
Tan05g2019 599 SMART ring_2 492 532 IPR001841 -
Tan05g2019 599 SUPERFAMILY Phosphoglycerate mutase-like 92 289 IPR029033 -
Tan05g2019 599 Pfam Ring finger domain 491 533 IPR001841 -
Tan05g2019 599 FunFam E3 ubiquitin-protein ligase SIS3 460 538 - -
Tan05g2019 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 538 IPR013083 -
Tan05g2019 599 Gene3D - 92 301 IPR029033 -
Tan05g2019 599 SUPERFAMILY RING/U-box 474 541 - -
Tan05g2019 599 Pfam Histidine phosphatase superfamily (branch 1) 95 286 IPR013078 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2019 Tan-Chr5:70171639 Tan09g2237 Tan-Chr9:72350026 2.60E-125 dispersed
Tan05g2019 Tan-Chr5:70171639 Tan09g2236 Tan-Chr9:72350026 2.40E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2019 K16284 - csv:101222360 558.14