Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2040 ATGGTCGGACAGGGAAATCACAGGTTGAAATTCTCAATCTTCCACCACCGATCTTCCTCAGATTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGTGGAATTTCCAAGTCATTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCAAACCTTCGAGCGGCTCTGCGTTCAAGTCTCTCAAGATTTGGGGTTTTCGCCGAAGGTTGAAGACGGGTCCAGGGCCGATTTCTCCTCTGTTATTACCAACAGAAACATGAAATTCACCATTCTCAAATGGTGCGATAACAACGGAATCGAACACCCACAGGCGCCCGATTACAGGTCCATTGAGCTTATTGTTCGTCAGTTAATGGAGAAGGAGATGCAAGAGAATCGATTTCTGGCTTCGGATAGCGAGTTGTTAAGGGGCGTCGCCGATAAACGGCCGGGCCTTGCGGTTCACGCGGCCACGGAGGTTGGGCTCCGAGTCAACCGATTTCAACTGAACTCGCCGCCGCAGACGGAGGAGATCGTACGGGAGAGTACTCTTTTGCCATTCAAAACGCAACCGTCTTGTTATGCTGCTCATTTTTCTTCTTCTTCTTCCTCTTCACATCGAAGCTTCGACAGAGAGGCGAATCACGGAGGAGATTCATATTCCCCGAATTCAGAAGAAGAAGCTCGAATCATCTCGAAAATCAGAAGCGTTGAGGAATTCGAGCAACAAGAAGGAGTAATTTCCCTAAGAAAATTAACGAAATCGGACGAATCGATTAGGGTTTCGTTATGCACGAAGGAACTACTTGCCGCGCTACTCCCTCTGGTTTCGTCCCGATCTACCAACATCCAAATCAACGCCGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAATCGAACAAATTGAAGATCGTACGAGCCGGATTTGTTCCGTCATTAATCGACGTTTTAGACGGCGGATCCACCGAATCACAAGAACACGCCGCGGGTGCTCTGTTCAGTTTATCCTTGGACGACGAGAACAAAATGGCGATTGGAATCCTCGGCGCGTTACCGGTGCTGATGAACGCGCTCCGATCCGACAGCGAGAGGACTAGGAACGATTCAGCCCTTTGTTTATACCATTTGACTCTAAACCCTAGCAACCGAGTCAAACTCGTGAAACTCGGCGCCGTTCCGATTCTGCTATCATCGACGAGAATCGAAGGCTCTGCGAGCCGAATACTGTTGATTCTTTGCAATATCGCCGTCTGCGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGATTGTTTGGTGAGGATGTTGAAGGATAAGGAGATGGATTCCGAGTCGACTCGGGAGAATTGTGTTGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAGAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGGTTGAAGAAAGGGGAAGCGAGAGGGCGAGGGAGAAGGCCAAGAGAATCTTGCAGATGATGAGAACCGGCGGGAGCGGTTCGGTCGAGATGGAAGGGGTCGGCCGACATGGACTTGATACCGCTGGAGTCAGCTGGACCGGTCGGGTTGGTACTGGCTTGAACCGCTACTCTACAAATACCACTAAGTTTTGA 1623 50.96 MVGQGNHRLKFSIFHHRSSSDSKPERPKEYPEEYLCGISKSLMADPVVVSSGQTFERLCVQVSQDLGFSPKVEDGSRADFSSVITNRNMKFTILKWCDNNGIEHPQAPDYRSIELIVRQLMEKEMQENRFLASDSELLRGVADKRPGLAVHAATEVGLRVNRFQLNSPPQTEEIVRESTLLPFKTQPSCYAAHFSSSSSSSHRSFDREANHGGDSYSPNSEEEARIISKIRSVEEFEQQEGVISLRKLTKSDESIRVSLCTKELLAALLPLVSSRSTNIQINAVASVVNLSLEKSNKLKIVRAGFVPSLIDVLDGGSTESQEHAAGALFSLSLDDENKMAIGILGALPVLMNALRSDSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSSTRIEGSASRILLILCNIAVCVDGRSAMLDANAVDCLVRMLKDKEMDSESTRENCVVALYALSQGGFRFRGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEMEGVGRHGLDTAGVSWTGRVGTGLNRYSTNTTKF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70587201 70589704 - Tan0011422.1 Tan05g2040 753348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2040 540 Gene3D - 224 401 IPR011989 -
Tan05g2040 540 Gene3D - 402 501 IPR011989 -
Tan05g2040 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 107 IPR013083 -
Tan05g2040 540 PANTHER U BOX DOMAIN-CONTAINING 18 499 - -
Tan05g2040 540 Pfam Armadillo/beta-catenin-like repeat 334 373 IPR000225 GO:0005515(InterPro)
Tan05g2040 540 Pfam Armadillo/beta-catenin-like repeat 296 332 IPR000225 GO:0005515(InterPro)
Tan05g2040 540 Pfam U-box domain 31 100 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g2040 540 SUPERFAMILY ARM repeat 229 497 IPR016024 -
Tan05g2040 540 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g2040 540 SUPERFAMILY RING/U-box 16 106 - -
Tan05g2040 540 MobiDBLite consensus disorder prediction 195 221 - -
Tan05g2040 540 SMART Ubox_2 33 96 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g2040 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515(InterPro)
Tan05g2040 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 263 305 IPR000225 GO:0005515(InterPro)
Tan05g2040 540 SMART arm_5 375 413 IPR000225 GO:0005515(InterPro)
Tan05g2040 540 SMART arm_5 414 457 IPR000225 GO:0005515(InterPro)
Tan05g2040 540 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Tan05g2040 540 SMART arm_5 334 374 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2040 Tan-Chr5:70587201 Tan01g2462 Tan-Chr1:31419204 5.00E-11 dispersed
Tan11g0585 Tan-Chr11:5210158 Tan05g2040 Tan-Chr5:70587201 4.60E-81 wgd
Tan05g2040 Tan-Chr5:70587201 Tan09g2201 Tan-Chr9:72023648 1.80E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2040 - - - 0.0