Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2043 ATGGCGGCTCTGCCATCCTCTTCTGCCTTACCGGATTCTTCTTCTTCCAGGCACCATACTTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTCGAAAGGCGGCGGATCTATGATATTGTGAATGTATTGGAGAGCGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGTTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAAGATCTTAAGGAGGAGGGCTTGAAGGAGAATTGCAGCGCATCTGATGGTAACGATTACGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAAACCTCAACTGCAGCCGTTCCCAAATCTTCGTCATCTTTAAAAGCCGACAATAGGAGGGAAAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTCGATGAAGCTGCAAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGACGGCTATATGACATTGCAAATGTGCTGTCTTCCATGAATCTAATTGAAAAGACCCATACAACTGACACAAGAAAGCCCGCTTTTAGGTGGTTGGGAGTGAGGGGAAAAGTCAAGAATGAACCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACTTAACAAATGTCAGTTGTAAGAAGACCAAGTCTGAAAATTCAACCTACCAGAGTTTAAATCATTGCCTCAGCATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGACAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATGTGAAGCGGACTCACGATTGGGAAAGCCTTTCCTCAACATTCCGGCCTCAGTATCACAACCAAGGTTTCTGGATGCAATTCTTGTGA 1080 44.07 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDDDERFSNPTGSQTSTAAVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDLTNVSCKKTKSENSTYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNVKRTHDWESLSSTFRPQYHNQGFWMQFL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70691970 70695497 - Tan0017666.2 Tan05g2043 753351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2043 359 PANTHER TRANSCRIPTION FACTOR E2F 9 351 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan05g2043 359 MobiDBLite consensus disorder prediction 131 148 - -
Tan05g2043 359 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2043 359 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2043 359 FunFam E2F transcription factor-like E2FE 149 236 - -
Tan05g2043 359 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2043 359 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2043 359 Gene3D - 149 236 IPR036388 -
Tan05g2043 359 Gene3D - 18 91 IPR036388 -
Tan05g2043 359 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Tan05g2043 359 MobiDBLite consensus disorder prediction 106 151 - -
Tan05g2043 359 FunFam E2F transcription factor 8 18 90 - -
Tan05g2043 359 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2043 K09391 - - csv:101219210 648.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2043 Tan-Chr5:70691970 Tan05g2045 Tan-Chr5:70692482 6.10E-199 dispersed
Tan05g2043 Tan-Chr5:70691970 Tan05g2044 Tan-Chr5:70692482 3.00E-198 tandem
Tan05g2043 Tan-Chr5:70691970 Tan09g2196 Tan-Chr9:71983529 2.50E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27538 PF02319 E2F_TDP 4.70E-20 CL0123 Tan TF