Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2045 ATGGCGGCTCTGCCATCCTCTTCTGCCTTACCGGATTCTTCTTCTTCCAGGCACCATACTTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTCGAAAGGCGGCGGATCTATGATATTGTGAATGTATTGGAGAGCGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGTTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAAGATCTTAAGGAGGAGGGCTTGAAGGAGAATTGCAGCGCATCTGATGGTAACGATTACGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAAACCTCAACTGCAGCCGTTCCCAAATCTTCGTCATCTTTAAAAGCCGACAATAGGAGGGAAAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTCGATGAAGCTGCAAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGACGGCTATATGACATTGCAAATGTGCTGTCTTCCATGAATCTAATTGAAAAGACCCATACAACTGACACAAGAAAGCCCGCTTTTAGGTGGTTGGGAGTGAGGGGAAAAGTCAAGAATGAACCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACTTAACAAATGTCAGTTGTAAGAAGACCAAGTCTGAAAATTCAACCTACCAGAGTTTAAATCATTGCCTCAGCATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGACAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATGTGAAGCGGACTCACGATTGGGAAAGCCTTTCCTCAACATTCCGGCCTCAGTATCACAACCAAGGTAAAACCCCTAATTAA 1074 43.95 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDDDERFSNPTGSQTSTAAVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDLTNVSCKKTKSENSTYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNVKRTHDWESLSSTFRPQYHNQGKTPN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70692482 70695497 - Tan0017666.3 Tan05g2045 753353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2045 357 FunFam E2F transcription factor-like E2FE 149 236 - -
Tan05g2045 357 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Tan05g2045 357 PANTHER TRANSCRIPTION FACTOR E2F 9 351 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan05g2045 357 MobiDBLite consensus disorder prediction 131 148 - -
Tan05g2045 357 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2045 357 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2045 357 Gene3D - 149 236 IPR036388 -
Tan05g2045 357 Gene3D - 18 91 IPR036388 -
Tan05g2045 357 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2045 357 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g2045 357 MobiDBLite consensus disorder prediction 336 357 - -
Tan05g2045 357 MobiDBLite consensus disorder prediction 326 357 - -
Tan05g2045 357 MobiDBLite consensus disorder prediction 106 151 - -
Tan05g2045 357 FunFam E2F transcription factor 8 18 90 - -
Tan05g2045 357 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2043 Tan-Chr5:70691970 Tan05g2045 Tan-Chr5:70692482 6.10E-199 dispersed
Tan05g2045 Tan-Chr5:70692482 Tan09g2196 Tan-Chr9:71983529 3.30E-88 dispersed
Tan05g2044 Tan-Chr5:70692482 Tan05g2045 Tan-Chr5:70692482 7.10E-198 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27540 PF02319 E2F_TDP 4.60E-20 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2045 K09391 - csv:101219210 648.662