Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2065 ATGGCTTTCACTTCCAGAAGGCCGAAGAAGAATGGAACCTCAAATTCAGACGACTCCGACGGCAAGGCGATCGTCAGAAGGAGGCCGCCGACGATAACGGAGCTTTTGACATCCACAAGCTCTACACTCGCAACGATCATGTTCGCGTGGACGATCATCCGCCAATACTGCCCTCACGGCCTCCGCCAATATCTCCATAGATATTTAGGCAAGTTCATCGATTACATTTATCCTAATCCGTACGTTCGAATCTCAATCTACGAATTCGTAGGCGAACGCCTCAATCGAAGCAAAGCCTTCGCGGCGGTTGAATCTTATCTGAGCACAAAACTATCAGACGACGCGAAACGACTCAAAGCCGAGGTCGGGGAGAGCAAGAACACCTTCTCATTGAGTATGGACGAGTATGAAAAAGTTACCGATGAGTATGAAAACGCCGAATTCTGGTGGACTTTGTGCAAAATCAGTGGATCGGCAAAGAAATCCACCTCTCTGTATCCGGAGCCCGATCGGAGATTATACCAACTTAAATTTCACAAGAAGCATCGAAACCTTGTAATCGAATCATATTTGAAGCATGTGTTGAAGGAAGGGAGAGAAATCAAAGTGAATCGGAGGCAGAGGAAGCTCTACACTAATGGAACTGGAAGTCGGTGGACTATTCACCGGCAATCGACGATGTGGAGCGAAGTTTACTTCGAGCATCCTGCTAATTTTGACACAATCGCCATGGATCCAGAGAAAAAGCAAGAGATTGTAGAAGATTTACTCACATTTAGCCAAAGCAAGGATTATTATGCTCGAATCGGCAAGGCGTGGAAACGAGGTTACCTTCTGTACGGTCCGCCGGGGACGGGGAAATCGACGATGATCGCCGCCATTGCCAATTTGCTGAATTACGACGTTTACGATTTGGAATTAACGGCGGTGAAGGACAATACAGAGCTCCGGAAGCTTCTAATTGAGACGACGAGTAAATCGATAATCGTCATCGAAGACATCGATTGTTCACTCGAACTCACCGGGCAGAGGAAAACCAAGAAGGAAGGAAGCGAGGAGAAGGAGAAAGAGAAGCCAATTAAGGAACATTTGAAGAAAGAAGAAGAAGAGGTGAAAAGCAGAGTGACTTTGTCAGGATTGCTGAATTTTATCGACGGCATTTGGTCGGCGTGCGGCGGAGAGAGGCTGATCGTTTTCACCACAAATCACGTGGAGAAGCTTGATCCGGCGTTGATTCGAAGCGGTCGAATGGACAAACACATCGAGCTTTCGTATTGCAGCTTTGAAGCATTCAAAGTGCTGGCTAAGAACTACTTGAATGTCGAAACGCATGAGCTTTTTGAGGAGATCCAACAGCTTATCAAAGAAGCCAAAATCACGCCGGCGGATGTTGCAGAGAATCTCATGCCAAAATCCAGGCAAGAAGTGGCTGAGAATTCGCTTCGTAGGTTGATTCGGAGCCTGGAAGAGCTGAAGAGAGCGGCGGAGATGGAGAAAACAAAGGAAGATAAAAAGAAAGAAAAATCAAAAGAGTCAATTTCAGAGCCTGTCAATGGCGATTCTTCAAAAAGTGACGAGTGA 1581 46.55 MAFTSRRPKKNGTSNSDDSDGKAIVRRRPPTITELLTSTSSTLATIMFAWTIIRQYCPHGLRQYLHRYLGKFIDYIYPNPYVRISIYEFVGERLNRSKAFAAVESYLSTKLSDDAKRLKAEVGESKNTFSLSMDEYEKVTDEYENAEFWWTLCKISGSAKKSTSLYPEPDRRLYQLKFHKKHRNLVIESYLKHVLKEGREIKVNRRQRKLYTNGTGSRWTIHRQSTMWSEVYFEHPANFDTIAMDPEKKQEIVEDLLTFSQSKDYYARIGKAWKRGYLLYGPPGTGKSTMIAAIANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLELTGQRKTKKEGSEEKEKEKPIKEHLKKEEEEVKSRVTLSGLLNFIDGIWSACGGERLIVFTTNHVEKLDPALIRSGRMDKHIELSYCSFEAFKVLAKNYLNVETHELFEEIQQLIKEAKITPADVAENLMPKSRQEVAENSLRRLIRSLEELKRAAEMEKTKEDKKKEKSKESISEPVNGDSSKSDE 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71094902 71096482 + Tan0012952.1 Tan05g2065 753373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2065 526 Pfam Domain associated at C-terminal with AAA 58 153 IPR025753 -
Tan05g2065 526 Gene3D - 229 421 IPR027417 -
Tan05g2065 526 Gene3D - 422 491 - -
Tan05g2065 526 Pfam ATPase family associated with various cellular activities (AAA) 277 424 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan05g2065 526 Coils Coil 474 508 - -
Tan05g2065 526 ProSitePatterns AAA-protein family signature. 395 413 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan05g2065 526 PANTHER BCS1 AAA-TYPE ATPASE 43 498 IPR050747 -
Tan05g2065 526 SMART AAA_5 273 427 IPR003593 GO:0016887(InterPro)
Tan05g2065 526 MobiDBLite consensus disorder prediction 495 526 - -
Tan05g2065 526 MobiDBLite consensus disorder prediction 1 24 - -
Tan05g2065 526 MobiDBLite consensus disorder prediction 345 365 - -
Tan05g2065 526 CDD RecA-like_BCS1 252 423 - -
Tan05g2065 526 FunFam AAA-ATPase ASD, mitochondrial 229 421 - -
Tan05g2065 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 480 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2065 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0078 Tan-Chr4:577216 Tan05g2065 Tan-Chr5:71094902 8.40E-73 dispersed
Tan05g2065 Tan-Chr5:71094902 Tan07g1275 Tan-Chr7:57955685 1.50E-145 dispersed
Tan05g2064 Tan-Chr5:71077195 Tan05g2065 Tan-Chr5:71094902 5.80E-168 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013815 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 2 1 2 1 0 25