Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2080 ATGATGAGTTTCGAAGATATCCGTGGAGGAAATGGATCGAATAGACCGTTCTTTTGCTCGTTCGATAGCGAAGATAATGGGGATGAAGACTTGGATGATTATTTCCATCACCCTGAAAAGAAGAGACGTTTAACTGGTGATCAAGTCCGGTTCCTTGAGAAAAGTTTCGAGATCGAGAACAAGCTCGAACCGGAAAGGAAAGTTCAATTAGCAAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCACGGTGGAAAACAAAACAGCTGGAGAAGGACTACGAGGCTCTTCAATCCAGCTATGGAAGCCTCAAGGTTGACTATGAAAACCTACTCAAGGAGAAGGATTCACTGAAAGCTGAGATTCTTCTCCTAACAGACAAGCTGCTACACAGAGAAAAAGAAAGGGGAAACTCTGTGATGTCTGAAGTTGGCAAATTTGCTGAAGAACCACCACATAATTTGGTTGCTGATTCACATTTGGAGGATGAAATCTCCAAATCTTCAAAGCTGGCTTGTAAGCAAGAGGATATCAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCATTCCTAGAGGCTGGAGATTCTTCCTATATTTTCGATCCCGATCAATCCGACTTATCACAAGACGAAGAAGATAACTTGGGAAAGAATCTGTTGCCTACTTACATCTTCCCAAAGCTCGAAGATGTCGATTACTCTGACCCGCCCACGAGTACTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAG 825 43.39 MMSFEDIRGGNGSNRPFFCSFDSEDNGDEDLDDYFHHPEKKRRLTGDQVRFLEKSFEIENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEILLLTDKLLHREKERGNSVMSEVGKFAEEPPHNLVADSHLEDEISKSSKLACKQEDISSVKSDIFDSDSPHYTDGVHSSFLEAGDSSYIFDPDQSDLSQDEEDNLGKNLLPTYIFPKLEDVDYSDPPTSTCNFVFPIEDNALWSWS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71222985 71225248 - Tan0020504.2 Tan05g2080 753388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2080 274 Gene3D - 35 102 - -
Tan05g2080 274 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 21 204 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Tan05g2080 274 SMART HOX_1 38 99 IPR001356 GO:0003677(InterPro)
Tan05g2080 274 FunFam Homeobox-leucine zipper protein HAT5 33 97 - -
Tan05g2080 274 SUPERFAMILY Homeodomain-like 22 97 IPR009057 -
Tan05g2080 274 PRINTS Lambda-repressor HTH signature 66 75 IPR000047 GO:0003677(InterPro)
Tan05g2080 274 PRINTS Lambda-repressor HTH signature 75 91 IPR000047 GO:0003677(InterPro)
Tan05g2080 274 Pfam Homeodomain 40 93 IPR001356 GO:0003677(InterPro)
Tan05g2080 274 CDD homeodomain 40 96 IPR001356 GO:0003677(InterPro)
Tan05g2080 274 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan05g2080 274 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677(InterPro)
Tan05g2080 274 Coils Coil 108 135 - -
Tan05g2080 274 Pfam Homeobox associated leucine zipper 95 136 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1126 Tan-Chr4:10362677 Tan05g2080 Tan-Chr5:71222985 2.50E-24 dispersed
Tan05g2080 Tan-Chr5:71222985 Tan07g1342 Tan-Chr7:62977400 1.90E-27 dispersed
Tan05g2079 Tan-Chr5:71222985 Tan05g2080 Tan-Chr5:71222985 2.90E-155 tandem
Tan05g2080 Tan-Chr5:71222985 Tan05g2081 Tan-Chr5:71222985 1.80E-155 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27543 PF00046 Homeodomain 4.40E-17 CL0123 Tan TF