Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2084 ATGAGAGAAACAGAAACCACCATTGTTGGGATTAAGCTGCTAATGATATTTGCTTTTGTAATGATATTTCCAACCCTGAAGGCTAATATTGCAGATTTTGATGAGGTTTGGCAGAAAAGAGCTCAAGAAGCCAAGAAGGCTGCCCTTGAGGCCTACCGACCCCATCCAGAAGAAGTCACCAATAATTTCAACAAGCAAGTCCACAGATCCTTTGATGGTGCAAATAATACAAGGAGAAATTTGCTCAAGAAGTACCATGGTTCATGCGTAGCTACGAATCCAATCGACCGATGTTGGAGATGTGATAAAAACTGGGCTAAAAACCGCAAGAATCTAGCTGAATGTGCCCTTGGCTTTGGCTATGGAACAACTGGAGGCAAAGATGGAAGAATTTATGTAGTTCGAGATTCGAGCGATAACGACATGCTTAATCCTAAACCAGGAACCTTGCGCCACGCTGTGATCCAGGATAGACCACTTTGGATTATATTTGCACATGACATGGTGATTAGGCTAGCTGAAGAGCTTATAATGACTGATAACAAGACATTAGATGGACGTGGTGCCAATGTGCATATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAAGAACATAATCATCCATAATCTGCACATTCATGACATCAAGGCTGGCAATGGAGGCCTTATAAGAGACTCCGTGAACCACTACGGATTCCGAACACGGAGCGATGGCGATGGGATCTCAATGTTTGGAGCTTCGAAAGTTTGGATAGATCATGTTTCAATGTCTAATTGTCAAGATGGACTAATAGATGCAGTCATGGCATCTACTGGCATTACCATTTCCAACTGTCACTTCACTCGCCATAATGACGTGATTTTATTAGGTGCAAGTGATGGCTACTCGGATGATCAGATTCTGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTTCAAAGGATGCCAAGATGCCGATGGGGGTTCGTCCATGTCGTCAACAATGACTACACTCACTGGCTTATGTACGCCATCGGCGGCAGCCACAATCCCACCATTATCAGCCAAGGCAACCGTTTCATTGCCCCACCAGACCAAAATTGCAAAGAGGTGACGAAAAGGGTGTATGCATCGGAAAGCGAGTGGAGATCGTGGAACTGGAGATCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTCGTCGAATCTGGGAACCCCATCGGAAAATACTCCAAGAAAGAAGTTATCCATGCAAAACCAGGGACCTTCGTCACCAGGCTTACACGATTCTCTGGGCCTCTGAAATGCAGAAGAAACCAGCCATGTTAG 1323 44.29 MRETETTIVGIKLLMIFAFVMIFPTLKANIADFDEVWQKRAQEAKKAALEAYRPHPEEVTNNFNKQVHRSFDGANNTRRNLLKKYHGSCVATNPIDRCWRCDKNWAKNRKNLAECALGFGYGTTGGKDGRIYVVRDSSDNDMLNPKPGTLRHAVIQDRPLWIIFAHDMVIRLAEELIMTDNKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLIRDSVNHYGFRTRSDGDGISMFGASKVWIDHVSMSNCQDGLIDAVMASTGITISNCHFTRHNDVILLGASDGYSDDQILQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPDQNCKEVTKRVYASESEWRSWNWRSEGDLMMNGAFFVESGNPIGKYSKKEVIHAKPGTFVTRLTRFSGPLKCRRNQPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71263800 71268175 + Tan0019200.1 Tan05g2084 753392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2084 440 Gene3D - 92 433 IPR012334 -
Tan05g2084 440 SMART amb_all 167 364 IPR002022 -
Tan05g2084 440 SUPERFAMILY Pectin lyase-like 80 435 IPR011050 -
Tan05g2084 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Tan05g2084 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Tan05g2084 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Tan05g2084 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Tan05g2084 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Tan05g2084 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Tan05g2084 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Tan05g2084 440 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570(InterPro)
Tan05g2084 440 Pfam Pectate lyase 178 358 IPR002022 -
Tan05g2084 440 PANTHER PECTATE LYASE 18-RELATED 23 436 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2084 Tan-Chr5:71263800 Tan07g1262 Tan-Chr7:56607071 1.70E-174 dispersed
Tan04g1114 Tan-Chr4:10207175 Tan05g2084 Tan-Chr5:71263800 1.10E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2084 K01728 - csv:101218812 813.527