Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2089 ATGGAGGCTGCTGCTGCTTTTGGCCGTCCAAGGCCTATCGTCAAGATCGAGAAGCCCACCGGAGATGGCGACAGGGACGGGGACGGGGACGGGGACGGGAATTCTCCCTCGAAACAACATCTCCTCGTTAAGATTGGGAATAATTATGGAAAACGAGAACAAGGAACTGAAGATAGAACAAGCAGCTCATCTGATCAAAAGGATTTAAGCTGCACCAAAATTCAGGAAGATCAACTGGAGTCCGCCCGAGCGGAAATGGGGGAAGTGAGAGAAGAAAACCAGAGACTAAAAATGAGTTTAAGTCAAATCATGAAGGATTACGAAGCCCTAAGAATGCAATTCCTCGGCATCGTCGGACGAGAAGCAAATAAATTACCGGAAAAAGCCGACGAGACCGAGCTCGTTTCACTGACGCTGGGGAGGTTTCCGGCGACGACGGAGAAGAATAAGATGAAGGCGGCGGATGAGAAATTAGATCAGAACAACAGGAGTTCCCAAATTGGCGACGAAGAAGAAGGCGTTAAAGAGAGTTTATCGCTGGGTTTGAACTGCAAATTCGAAGGGGAATCGACGGCGGCTAAACAAGCTGATTCTCCGAATCGGAGTTTGACCAACAGTTTTGATCATGAGGCGAAGGAGGAGGCCGGAGAGACGAGTTGGCCCCCGAGTAAAGGGGGGAAGACGATGAGAAGTGGCGATGATAATGACGTTGCGCCGCAGAATCCGCCCAAGCGCGCTAGGGTTTGCGTTAGAGCTCGGTGTGAGACCGCCACGATGAACGATGGATGTCAATGGAGAAAATACGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATACTACCGCTGCACAGGCTCGCCGACATGTCCCGTTCGAAAACAAGTCCAAAGATGTGCCGACGACATGTCGATCTTAATCACCACCTACGAAGGCACCCACAACCACCAATTACCCGTCTCAGCCACCGCCATGGCCTCCACCACTTCCGCCGCCGCCTCCATGCTCCTTTCCGGCTCTTCTACCTCTTCCGCCGCCGCCAATCAGCTCCACGGCCTAAACTTTTACCTTTCCCCAAATAACAACCAAACTAATTCCAAACACAATTTTTATTTGCCCAATAACTCCTCAATAATTTCATCCACTTCCCCAACTCACCCCACCATCACTCTCGACCTCACTTCAAATAATAATAATCCTTCCTCCTCGACCCATTTTGGTAAATTCGCCTCCTCTACTTTCGCCAATTCTCGGTACCCTTTTACCAGCCAACTCGATTTCGGATCCTCCAGAAATAATGTGCTGTCCTGGAATAACGGCCTTCTCAGTTACAATAACAGAAATAACAACCAACCCACAACCGCCAATACTATCTATCAAAATTACATCCAACAACAACGGAATAATAATCTTAATCATCATCATAATCATAATGTCGCCTCCGCCACCTCACTGCCACATCAGCAGCAGCCTCCTTTGCCCGATACGATCGCTGCCGCCACCAAGGCTATCACGGCGGACCCGAGCTTCCAGTCTGCTCTCGCTGCCGCTCTTACGTCGATCATCGGCACCAGTGCCGGTGCTGGCGGTGTGGTTCAGTTGGCGTCGACGGCAAATAAAGGGAATGGATGTGGCACGAGCTTTTTGAACAATATTGGAACGGGGACGGGAACGGGGAATGCGAGTAATTCAACCTCTGCAACTGGGAATATGGTGTTTGTTCCGGGCAGTTCATTGCCGTTTTCGAATCCAAAGAGCGCGTCGGCATCTCCGGGGGATCATATTGATCTTACCAATTAA 1803 50.14 MEAAAAFGRPRPIVKIEKPTGDGDRDGDGDGDGNSPSKQHLLVKIGNNYGKREQGTEDRTSSSSDQKDLSCTKIQEDQLESARAEMGEVREENQRLKMSLSQIMKDYEALRMQFLGIVGREANKLPEKADETELVSLTLGRFPATTEKNKMKAADEKLDQNNRSSQIGDEEEGVKESLSLGLNCKFEGESTAAKQADSPNRSLTNSFDHEAKEEAGETSWPPSKGGKTMRSGDDNDVAPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGTHNHQLPVSATAMASTTSAAASMLLSGSSTSSAAANQLHGLNFYLSPNNNQTNSKHNFYLPNNSSIISSTSPTHPTITLDLTSNNNNPSSSTHFGKFASSTFANSRYPFTSQLDFGSSRNNVLSWNNGLLSYNNRNNNQPTTANTIYQNYIQQQRNNNLNHHHNHNVASATSLPHQQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGTSAGAGGVVQLASTANKGNGCGTSFLNNIGTGTGTGNASNSTSATGNMVFVPGSSLPFSNPKSASASPGDHIDLTN 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71364311 71368374 + Tan0018048.1 Tan05g2089 753397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2089 600 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 526 IPR044810 GO:0003700(InterPro)
Tan05g2089 600 Pfam WRKY DNA -binding domain 260 318 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2089 600 ProSiteProfiles WRKY domain profile. 254 320 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2089 600 MobiDBLite consensus disorder prediction 148 174 - -
Tan05g2089 600 FunFam probable WRKY transcription factor 31 244 321 - -
Tan05g2089 600 SUPERFAMILY WRKY DNA-binding domain 252 320 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2089 600 MobiDBLite consensus disorder prediction 1 73 - -
Tan05g2089 600 MobiDBLite consensus disorder prediction 51 73 - -
Tan05g2089 600 Gene3D WRKY domain 244 321 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2089 600 SMART WRKY_cls 259 319 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2089 600 MobiDBLite consensus disorder prediction 15 33 - -
Tan05g2089 600 Coils Coil 72 99 - -
Tan05g2089 600 MobiDBLite consensus disorder prediction 190 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2288 Tan-Chr3:77077856 Tan05g2089 Tan-Chr5:71364311 4.00E-41 dispersed
Tan04g2504 Tan-Chr4:83951777 Tan05g2089 Tan-Chr5:71364311 3.80E-13 dispersed
Tan05g2089 Tan-Chr5:71364311 Tan09g2158 Tan-Chr9:71677977 1.10E-88 dispersed
Tan01g0729 Tan-Chr1:6908472 Tan05g2089 Tan-Chr5:71364311 7.30E-46 transposed
Tan05g2089 Tan-Chr5:71364311 Tan09g2157 Tan-Chr9:71677977 3.20E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27545 PF03106 WRKY 1.50E-23 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2089 - - - 0.0