Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g2089 | ATGGAGGCTGCTGCTGCTTTTGGCCGTCCAAGGCCTATCGTCAAGATCGAGAAGCCCACCGGAGATGGCGACAGGGACGGGGACGGGGACGGGGACGGGAATTCTCCCTCGAAACAACATCTCCTCGTTAAGATTGGGAATAATTATGGAAAACGAGAACAAGGAACTGAAGATAGAACAAGCAGCTCATCTGATCAAAAGGATTTAAGCTGCACCAAAATTCAGGAAGATCAACTGGAGTCCGCCCGAGCGGAAATGGGGGAAGTGAGAGAAGAAAACCAGAGACTAAAAATGAGTTTAAGTCAAATCATGAAGGATTACGAAGCCCTAAGAATGCAATTCCTCGGCATCGTCGGACGAGAAGCAAATAAATTACCGGAAAAAGCCGACGAGACCGAGCTCGTTTCACTGACGCTGGGGAGGTTTCCGGCGACGACGGAGAAGAATAAGATGAAGGCGGCGGATGAGAAATTAGATCAGAACAACAGGAGTTCCCAAATTGGCGACGAAGAAGAAGGCGTTAAAGAGAGTTTATCGCTGGGTTTGAACTGCAAATTCGAAGGGGAATCGACGGCGGCTAAACAAGCTGATTCTCCGAATCGGAGTTTGACCAACAGTTTTGATCATGAGGCGAAGGAGGAGGCCGGAGAGACGAGTTGGCCCCCGAGTAAAGGGGGGAAGACGATGAGAAGTGGCGATGATAATGACGTTGCGCCGCAGAATCCGCCCAAGCGCGCTAGGGTTTGCGTTAGAGCTCGGTGTGAGACCGCCACGATGAACGATGGATGTCAATGGAGAAAATACGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATACTACCGCTGCACAGGCTCGCCGACATGTCCCGTTCGAAAACAAGTCCAAAGATGTGCCGACGACATGTCGATCTTAATCACCACCTACGAAGGCACCCACAACCACCAATTACCCGTCTCAGCCACCGCCATGGCCTCCACCACTTCCGCCGCCGCCTCCATGCTCCTTTCCGGCTCTTCTACCTCTTCCGCCGCCGCCAATCAGCTCCACGGCCTAAACTTTTACCTTTCCCCAAATAACAACCAAACTAATTCCAAACACAATTTTTATTTGCCCAATAACTCCTCAATAATTTCATCCACTTCCCCAACTCACCCCACCATCACTCTCGACCTCACTTCAAATAATAATAATCCTTCCTCCTCGACCCATTTTGGTAAATTCGCCTCCTCTACTTTCGCCAATTCTCGGTACCCTTTTACCAGCCAACTCGATTTCGGATCCTCCAGAAATAATGTGCTGTCCTGGAATAACGGCCTTCTCAGTTACAATAACAGAAATAACAACCAACCCACAACCGCCAATACTATCTATCAAAATTACATCCAACAACAACGGAATAATAATCTTAATCATCATCATAATCATAATGTCGCCTCCGCCACCTCACTGCCACATCAGCAGCAGCCTCCTTTGCCCGATACGATCGCTGCCGCCACCAAGGCTATCACGGCGGACCCGAGCTTCCAGTCTGCTCTCGCTGCCGCTCTTACGTCGATCATCGGCACCAGTGCCGGTGCTGGCGGTGTGGTTCAGTTGGCGTCGACGGCAAATAAAGGGAATGGATGTGGCACGAGCTTTTTGAACAATATTGGAACGGGGACGGGAACGGGGAATGCGAGTAATTCAACCTCTGCAACTGGGAATATGGTGTTTGTTCCGGGCAGTTCATTGCCGTTTTCGAATCCAAAGAGCGCGTCGGCATCTCCGGGGGATCATATTGATCTTACCAATTAA | 1803 | 50.14 | MEAAAAFGRPRPIVKIEKPTGDGDRDGDGDGDGNSPSKQHLLVKIGNNYGKREQGTEDRTSSSSDQKDLSCTKIQEDQLESARAEMGEVREENQRLKMSLSQIMKDYEALRMQFLGIVGREANKLPEKADETELVSLTLGRFPATTEKNKMKAADEKLDQNNRSSQIGDEEEGVKESLSLGLNCKFEGESTAAKQADSPNRSLTNSFDHEAKEEAGETSWPPSKGGKTMRSGDDNDVAPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGTHNHQLPVSATAMASTTSAAASMLLSGSSTSSAAANQLHGLNFYLSPNNNQTNSKHNFYLPNNSSIISSTSPTHPTITLDLTSNNNNPSSSTHFGKFASSTFANSRYPFTSQLDFGSSRNNVLSWNNGLLSYNNRNNNQPTTANTIYQNYIQQQRNNNLNHHHNHNVASATSLPHQQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGTSAGAGGVVQLASTANKGNGCGTSFLNNIGTGTGTGNASNSTSATGNMVFVPGSSLPFSNPKSASASPGDHIDLTN | 600 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 71364311 | 71368374 | + | Tan0018048.1 | Tan05g2089 | 753397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g2089 | 600 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 60 | 526 | IPR044810 | GO:0003700(InterPro) | |
Tan05g2089 | 600 | Pfam | WRKY DNA -binding domain | 260 | 318 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g2089 | 600 | ProSiteProfiles | WRKY domain profile. | 254 | 320 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g2089 | 600 | MobiDBLite | consensus disorder prediction | 148 | 174 | - | - | |
Tan05g2089 | 600 | FunFam | probable WRKY transcription factor 31 | 244 | 321 | - | - | |
Tan05g2089 | 600 | SUPERFAMILY | WRKY DNA-binding domain | 252 | 320 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g2089 | 600 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
Tan05g2089 | 600 | MobiDBLite | consensus disorder prediction | 51 | 73 | - | - | |
Tan05g2089 | 600 | Gene3D | WRKY domain | 244 | 321 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g2089 | 600 | SMART | WRKY_cls | 259 | 319 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan05g2089 | 600 | MobiDBLite | consensus disorder prediction | 15 | 33 | - | - | |
Tan05g2089 | 600 | Coils | Coil | 72 | 99 | - | - | |
Tan05g2089 | 600 | MobiDBLite | consensus disorder prediction | 190 | 245 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g2288 | Tan-Chr3:77077856 | Tan05g2089 | Tan-Chr5:71364311 | 4.00E-41 | dispersed | |
Tan04g2504 | Tan-Chr4:83951777 | Tan05g2089 | Tan-Chr5:71364311 | 3.80E-13 | dispersed | |
Tan05g2089 | Tan-Chr5:71364311 | Tan09g2158 | Tan-Chr9:71677977 | 1.10E-88 | dispersed | |
Tan01g0729 | Tan-Chr1:6908472 | Tan05g2089 | Tan-Chr5:71364311 | 7.30E-46 | transposed | |
Tan05g2089 | Tan-Chr5:71364311 | Tan09g2157 | Tan-Chr9:71677977 | 3.20E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27545 | PF03106 | WRKY | 1.50E-23 | CL0274 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g2089 | - | - | - | 0.0 |